RnoINT0045221 @ rn6
Intron Retention
Gene
ENSRNOG00000009403 | Dcaf17
Description
DDB1 and CUL4 associated factor 17 [Source:RGD Symbol;Acc:1565551]
Coordinates
chr3:57656152-57659204:+
Coord C1 exon
chr3:57656152-57656230
Coord A exon
chr3:57656231-57659114
Coord C2 exon
chr3:57659115-57659204
Length
2884 bp
Sequences
Splice sites
5' ss Seq
CAGGTCCGC
5' ss Score
5.13
3' ss Seq
ATTTTCTTGTTATCTTGTAGGCA
3' ss Score
10.45
Exon sequences
Seq C1 exon
GTACCTGAGCTGGGACACTCCTCAAGAGGTCATTGCAGTGAAGTCGGCTCAGAACAAAGGGTCTGCAGCAGCTCGGCAG
Seq A exon
GTCCGCAGCCACCACACAGTCCTTGGGGTTGCACACTGTGAAAGCCAGTGCTGTTAAACTTAAGCAGACTTGATATGGGCTTCTCTCTATTTTATACTTATTTATTTGGGGTCCTGGGGATTGATCCATGCATGCCCCCCGTGCTCTAGTGTTCAGCTACATCCCTTGGCTGTTCTCTCTAGAGAATCATCCAGAATCGGTCAGACTCCGATCAGTGGTGCAAGTCTTTGATCCCACACTTGTAGAGATCTCTGAGATCCAGGCCAGCCAAGGCTGTATTGTGAAACCCTATTTAAAAAAAAAAAAAAAAGCATGACCCAGAATTTATTAGACCTTATAAAGCCTAGAACTACCTATCTAGAAACTTATTTCTGTTGATAACGGATTAGAAAATATTTATTGAACATTTTTATAAAATACAGATTTTGTTTTCATAGAGATATTCTGTTCTTATCTCAGAATAGAATGTATTTTTTAAAAAACAACTATAATAAGCAACAATTTTGTGGGAGTTTTTTGGGGTTTTTTTTTTTTTTTTTTGGTAATATCTGTATTTAAGTTCCTCCTAGTGTTTAATATAAAACATAGTGTTTAACATATCCTTAAAAATATCCTGTAACACTGACTGTCAGGTAATTTACTTAGAATTCTTGGCTGTTCTCTCTAGAGAATCATCCAGAATCGGTCAGACTCCGATCAGTGGTGCAAGTCTTTGATCCCACACTTGTAGAGATCTCTGAGATCCAGGCCAGCCAAGGCTGTATTGTGAAACCCTATTTAAAAAAAAAAAAAAAAGCATGACCCAGAATTTATTAGACCTTATAAAGCCTAGAACTACCTATCTAGAAACTTATTTCTGTTGATAACGGATTAGAAAATATTTATTGAACATTTTTATAAAATACAGATTTTGTTTTCATAGAGATATTCTGTTCTTATCTCAGAATAGAATGTATTTTTTAAAAAACAACTATAATAAGCAACAATTTTGTGGGAGTTTTTTGGGGTTTTTTTTTTTTTTTTTTGGTAATATCTGTATTTAAGTTCCTCCTAGTGTTTAATATAAAACATAGTGTTTAACATATCCTTAAAAATATCCTGTAACACTGACTGTCAGGTAATTTACTTAGAATTCTTTTTTTTTTTTTTTTTTTTTTTGGTTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGTAAGCGCTCTACCACTGAGCTAAATCCCCAGCCCCTACTTAGAATTCTTGAATGCTGTTTCATTTGGGGTATTTTATGTTTTGGTTTTGATTATTGAGGCAAAGTCTGGCTGTGTAGCCTAGTTTATCTTCAAACCGAGATCCTCCTGCCTCTGCCTGCCAAAACGCTGTGATTGCAGGTATGTGCTCCCATACCTCATTGAGCCTTTTAACAATTGAATGGTTCCTCTCTTTTTACCTTATTTAAATAAACACATCAGGTGCTCCCTTATCAACACAGCAGCACATCCCTTCACCCTCTACATTTTGTTCCTCTTATCTGCCTTCTCTGTCTTTATGTGTGCCCCTGAGCCAAATAAGCTATTGGTTAGGTCTTTAAACGTCATTAAACAATGTTTAAGTTACACTAATCTATCTATGCGTCTGGGGCTCGGGGAACATGTCACAGCATACGTATAGAGGAGGACAGCTTGCAGGAGTCACTTCTCCTTCTACTCGGTAGGTTTCAGGGATCAAAAAACCTCACCACCAAGCCATTTTGCCAGATCTAAACTTACTTTTATGATGGTTTTTTATAAATGTTTTCTACATCTTCATATCAATAGCATGACCATATGCCTTTAATTGGGATCTCTTGGGCCTCTTCTCACACTGTTGAGGTACAACCAAGAAAGAGTTACTGTGTACTGTCGCTTTCTTTTCATACCCTGGCTGCATTGCGTAAACATGAAAGACTGTAAGAAAGTAAGTCATTTCCTGAGGATTGGAGCAGTGTCTAGCCTAATGTGCCACCTGAAGAACACCGATTAACTGTGCATGGTCAGGTATTAAGGTTCTTACTTAACACCTGATAATGTTAAGTCTTGTAAGCATTTCCGCATTCAAGACTGTGTTCCTACAATCTCTAGCCAACAAGCAGTAGTTCTTATTCTTAGTTAAGGTACACAAATTATGCCTACCTTTAGGTTGAAGGAGCACGGATCTTAGCTAAGTAAAAGTATGTGTCTTTGAAGGGCAGGTCTCTGGGGCTTTAAACATCACACTCTGTTTTTGGATTTTTACTTTTTTTGTGGTTTTTGATTGATAGTCTTGATAGTCAAACCTTATTTCTGCTCAAGCCATTCCTAAATTCTAGATACTCCCTTGAATTCTTTACTAAAGAAGTAAATAGATTATTTTGCATTTCATAATGGAAATAAATTGTTGGAAACTTGCTCTTCAAAATAAAGGATCACTTTTCTTCAAGTTGATAAGTCATTCAAGTGTTTATTGGCATACTGTCTGTCTTCAGTACAATCAGACCAATGTAAGTCTTATCAGTGATATGACCATAGTAACACTATGCTTTTGGTTAGCGTCATTATTACCAGAACTCCGGTTCACAGTACAAATACAGCACATTTTGATGGTGAGAAATACTCGTTTCCCTTTGTAGTGTTTATATATATATATTATATATATATAATATATATATATAGTACTGGAGGATTAGTAAACATTTTAAGTGTGTTTCCTTCACTGGTAAAATAGCTTCAGTCTAAATCGATGTAAACTCTCAATTCATGAAAAGTTCTGTATAATTGAACGTTGGGACAGATGGGTATTTTGAACTCGTGAAGATAGTGGTTTCTGAGAGCTTTGGAGAGCTGCCGGTAATTTTCTTGTTATCTTGTAG
Seq C2 exon
GCAGGCACTCAGCCTCCTGTTCTGTTGTACCTCGCCGTGTTCCGGGTCCTGCCCTTTTCCCTTGTAGGGATTCTAGAGATCAACAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009403:ENSRNOT00000031463:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.074 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]