GgaINT0046075 @ galGal3
Intron Retention
Gene
ENSGALG00000009558 | DCAF17
Description
NA
Coordinates
chr7:19477702-19478036:-
Coord C1 exon
chr7:19477958-19478036
Coord A exon
chr7:19477792-19477957
Coord C2 exon
chr7:19477702-19477791
Length
166 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
CAATGCTTTTTCTTTCCCAGGCA
3' ss Score
9.3
Exon sequences
Seq C1 exon
GTACCTAAGTTGGGATACTCCTCAAGAAGTAATGGTTGTGAAGTCAGCTCAGAATAAACTCCCTGCAGAAGCACGGCAG
Seq A exon
GTAAGTTTGTTGAAAAACTGTTCTTAAATTTTTACAATATCGGTCACAAATTTACAAGGACAGATATGGAGACATTATGCTTTGCAACTATGATAAAAGATAAAGACATCCTACTGCCAGTAAATACCTCAAGTCTAATGTGTGTTCAATGCTTTTTCTTTCCCAG
Seq C2 exon
GCAGGTATCCAACAGTCTGTATTGTTCCATCTTGCTGTGTTCCAAGTTTTGCCTCTGTCATTTATTGGAATGCTAGAAATAAACAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009558:ENSGALT00000015562:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACCTAAGTTGGGATACTCCTCA
R:
TAGCATTCCAATAAATGACAGAGGCA
Band lengths:
154-320
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]