MmuINT0046884 @ mm9
Intron Retention
Gene
ENSMUSG00000041966 | Dcaf17
Description
DDB1 and CUL4 associated factor 17 [Source:MGI Symbol;Acc:MGI:1923013]
Coordinates
chr2:70911178-70913593:+
Coord C1 exon
chr2:70911178-70911256
Coord A exon
chr2:70911257-70913503
Coord C2 exon
chr2:70913504-70913593
Length
2247 bp
Sequences
Splice sites
5' ss Seq
CAGGTCCGC
5' ss Score
5.13
3' ss Seq
AATGTATTCTTACCTTGTAGGCA
3' ss Score
8.7
Exon sequences
Seq C1 exon
GTACCTGAGCTGGGACACACCTCAGGAGGTCATCGCAGTGAAGTCGGCTCAGAACAAAGGCTCCGCAGCGGCTCGCCAG
Seq A exon
GTCCGCAGCATTTGGCACGTGTGTCCTTGGCATTTGCACACTTGTGAAAGCAAGTGCTGTTTAAATTTGAGCAGACTACTCATATGGGCTTCTCTCTATTTTGTATCTACTTTTGGGTACTGGAGATCATTGATCCATGTCTGCCTACAGTGCTCTAGTGCTAAGCCTCACCCTCAGCTGTTCTCTTTAAAGAATCGTCTAGAATTGGTCAGGATAATGGTTCAAGGCCTTAATCCCAGCACTTGCAGAAGCAGGAGGATCTCTGAGATCCAGGCCAGCCACGGCTGCATAGTGAGACCCTGTTTAATTAAAAAAAACATGACCGAGAATTTACTAGGCCTTATAAGGCCTAGGACTACCTATCAGGAAACTATTTCTGTTGGTGACTGATAAGGAAATCCTTAGAAAATATTTGAACATTTTTATAAATACAGATTTTTTTTCTCATATTTTCTGTTTTTATCACAGGACATGACATATTTTTTAAAAAAACAACTATAATAAGAAGCAACAATTTTGTTTGCTTTTTTGGCAAGTTCCTGCTAGTGCTTAATGTAAAACATAGCCTTTTTAAAAAAAAAATCCTGTAATACTGACTGTCAGATAATGTACTTAGAATTCTTGGCTGTGTAGCCTAGTCTGTCTTTCAACTGAGATCCTCCTGCTTCAGCCTGCCAAATGCTGTGATTGCAAGTGTGTGCTCCCATACCTAACTTAGGAACCTTTGAACAGATGGTTTCTCTCTCTTTACCTTATTTAAATAACCACATCAGGTTTTCCCTTATCAACACAGCAGCACATTCCTTTACCCTCTGCATTCTGTTCCTCTCTTATCTGCCTTCTCGGTCCTTACGTATGCCACTGAGCCAAATAAGCTATTGGTTATCTCTTTAAACATCATTAAACAACTTTTAAGTTGCACTAATATATCTATGCATGTGTGGCTTGGGGCACATGTCACAGCATACGTGTAGAGGAGGACAGGACAGCTTGCAGGAGTCATTTCTCCTTCTACCCTTTAGGTTCCAGGGGTCAAAGACCTCACCACCAAGCCATTTCACCAAATCTAAACTTACTTTTAATGATGGTTATTTATAAATATTTCCTATATCTTGCCCAGTCATCTCAACAGCATGACCACATGCCTTTATTGGGTTCTCTTGGGCCGTGTTTCACACTGTTAGGTACAAACCAAGAAAGAGTTGCTGTCCACTGCTGCTTTCTTTTCACACCTGGCTGTGTTGCGTAAATATGAAAGACTCTAACAAAGTAACACATTTCATGAGGCTTCTAGAAGTGTCTGGCCTAATATGCCACCTGAAGAACACCAGTCTAACTAACACAGTTAGTGCATGGTCCTAGGAATTAAGGTTTTAATTTACCACCTGATAATGTCATTAAGTCTTGTAAGCATTTCTGCGTTCAAGACTGTGTTCCCACAATCTGTAGCCAAGAAGCAGTAGTTCTTGGTGAAGATATACAAATTACACCTGCCTTTAGGTTTGAGGAGCATGGATCTTGGCTAAGTAAAAGTATGTCTCTTTGAAAGGGCAGGTCTCTAGGGCTTTAAACATCACATTCTGCTTTTGGATTTGTCTGTGTTTTAACTTTTACTTCCTGTGGTTTTGATAGGTAGTCTTGATAGTCAGACCTTATTTCTGCTCAAGCAGAGTTTTGCTGTGATGGGTCTGACAACTTTTCCATCCCTAAATTCCAGATACCCCCTTGAATTCTTTACTAGAGAAGTAAATAGATTATTTTGCATTTCATAATGGAAATAAACTGTTGGAAATTTGCTTCTCAAAATAAAGGCCCACTCTTCAAGTTGATATCATTCAAGCTTTTTCTGACATACTGTCTATCTTCAGTACAAGCAGGCCACTGTAAGGTTTGTTGGTGACATAACCATAGTAACCATAGTAACACTATGCTCTTGGTTAGATGCATTATTATTAGAACTCCAGTTCACAAATACACCATATTTAGTGGTAAGAAATACTTGTTTCCATTTGTGGTGTTTTATGTTTATTTTCACTATGTTTGTAAGAACCTGGAAGATTAGTGAACATTTTAAGTATGTTTCCTTTACTGGTAAACTAACTTTCAGTCTAAATAGATTGGAAAGTCTCAGTTCATGAAAAGTTTTATTTAATTGAATGCTAGGACAGATGGATATTTTGAACTCATGAAGGTAGTGTTTTCAGAAGTGCTTTGGAGAGCTGCCCATAATGTATTCTTACCTTGTAG
Seq C2 exon
GCAGGCACTTCACCACCCGTTTTGTTGTACCTCGCAGTGTTCCGGGTTCTGCCCTTTTCACTTGTAGGGATTCTAGAGATCAACAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041966-Dcaf17:NM_001165982:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.005 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: