HsaINT0045235 @ hg19
Intron Retention
Gene
ENSG00000115827 | DCAF17
Description
DDB1 and CUL4 associated factor 17 [Source:HGNC Symbol;Acc:25784]
Coordinates
chr2:172306389-172309723:+
Coord C1 exon
chr2:172306389-172306467
Coord A exon
chr2:172306468-172309633
Coord C2 exon
chr2:172309634-172309723
Length
3166 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAC
5' ss Score
7.48
3' ss Seq
ATTGTAGTCTTTCCTTCTAGGCA
3' ss Score
7.51
Exon sequences
Seq C1 exon
ATACTTGAGCTGGGACACTCCTCAAGAAGTCATTGCAGTTAAGTCAGCTCAGAACAGAGGCTCAGCAGTGGCCCGGCAG
Seq A exon
GTATACATATTTAAACATTCAATAAAATGAAGACTCTTTTTCATAGGAATTTGTCTGCAGATTTGTTATGAAAAATCTAATGATCTTTTATTTCTGAAGCATGCTGTAAAAGATAGGATTCACGGCAACCTGGATGGGATCGGAGACCATTATTCTAAGTGAAGTAACTAAGAAATGGAAAACCAGACATTGTATTTTCTCACTCATAAGTGAGAGCTAAGCCTTGAGGATGCAAAGGCATAAGAATGATACAATTTACTCTGGAGACTCGGGTGAAAGGGTGGGAGGTGGGTGAGGGATGAAACACTACACATTGGGTATAGTGTATACCACTCAGGTGATATGTGCACCAAAATCTGAGAAATCACCACTAAAGAACTTACTCATGTGACCCAACACCACCTGTTCCTCAAAAACCTATTGAAATAAAATAATAATAAAAATATTTTAAAAAAGAAAAGTTGATAGGTAGATTTTTTTTTTCTGAAGCGTGCTATTTAAAGAGATTTTTCTCTTAAAGAATTACCCAGGATTTACTAGATTTTATAAAGTCTGGAAATTTATATCAAGAAACTTTTTGTTTCTATTGGTGACTTATGGGGAAATACTATGGAAAGCATTTATTGAGCACTTAAAAAATAGATATAGACTGCTTTTAGAGGTTTTCTGTTTCTTTATACACCGGGACACCTAGAAAAAGCAAATACTTATTTTGTGTCTCCCCTTGGCAGAGTCTGTTGTAGTTCTTTCTCATTTTTAATTTGAACTACTTCAGCTGTTTCTCACTAGTGTCCTTGATTGCAAAACAGGCAGGCACTGATCTGAGTTCTTTACCTGTATTTACTAATTTGATCTTCAGCACACTCCTTTCAGTAGATACTTTTATCATCCCATTTTACAGGTGAGGATTCTGAGCCCCAGAGAAGCTAAGTAACTTATCCAGCATCATAGTGTTGGTAACCTTGGCTCAAACTCAGGCAGTTTAGCTCTAGAGTCCCTGCTCTTATGCACTGTAGTAAGCTGCCCCTTCTTGAAATTTCTGTAATATGGACTGGCAGGTGAAGTTTATATAGAACTCTAGCATTAAAAAAAAAAAAAAGTTAAGTAGTTCCTTTAATTTTACCTTGTTTAGATAACTACATCAAGCATTTCCTTGTCAACCCTCCAGTGTATTCCCATACATGCTGGGTCTGTGAACTCTGCTTTTCATTCCTCCCTCATCTCTCTTGTCTACTTTTTCTGTATGCCCCTGAAGCCAAGCAAACTATTTGTTGGCTACTTCTACTTACTTTTTATCATGGTTATCTGAATGTTTTCCTACCCTTTACTAATCCTGCCCAGTCACATTAATAACTTAACTGCATGCCTTTTATTGGAATCTCCTTACCCTTTTCCTGATTTATTTAGTATGACATCTAAGAAAGAGAGATGCTATCTCTCTCTTAGTAATACTTCTCTCTTTATACTCTTACTACCTTGCTTTTACTTTGGTAAAGGAAAATTCAGAAAAGTGGGATAGTATAAAAAAGCAAAACATTTTGCTACTTTGAGAATTCTAAAGTGTCTTGTCTGATGTACCTTTTTAATAATTTAAATTGCTAAAGAGCAAGAATTTTTGTTTTGTTTTGTTTTGTTTTGAGACGGAGTCTCGCTTTGTTGCCAGGCTAGAGTGTCGTGGTGAGCTCTCAGCTCACTGCATCCTCTGCCTCCCAGGTTCAAGCAATTCTCCTGACTCAGCCTCCTGAGTAGCTGGGACTACAGGCGTGCACCACCAGGCCCAGCTAATTTTTGTATTTTTACTAGAGACGGGGTTTCACCATGTTGGCCAGCATGGTCTCGATCTCTTGACCTCCCAAAGTCCTGGGATTTACAGGCGTGAACCACCACTCCTGGCTAAGAATTTTTTTAAGTTTAATTCTATACGTTATCATATGTTAATGTTTTACATTTACCATCACCTGATAATGTTAATAAAATCTTGTCAGTATTTCTATATTCTGGACTGTTTTCCTACAGTCTCCAGCCAACAAGTAGTAGCTCTTAGTTGGGGTATATAAACTGTACTTTTCCTTTGGGTTTAAGGAACACAGAAGGAGTCTGATTTACCTTGAAGATATTAGTTCAATAAAAATTTATCCCTTTGGAAGGGAGAATCTTTTGGGCTTTAAGCATTACAATCTTTTTTGTTTGCTGTTTATTTGTTTTCTAACTTTTAGTTATAGCAGTTTTGATTGGTGTTTCCAGCCTTAAAAGTTCTATTGAAGCAGAGACTGGCTGTGATGGGGCAGACAGCTTTGCCTAACACAAATTTAAGAAATTCCCTTCAAAACTGTATTGGAGAAGTACAAGAGATTGTTTTACATTTCACAGTGGCAAGAAATTGGACCTTGTTCTTCAAAGTAAGGAGGCTATCCTTTTCAAGCAGAAGAGTCACTCAAGCTTTCATTGATGATATTATTTCTAATTTCCTGTAAAGGAGTCAGCACAACACTACTTTCATTATATATTTATTTATTTAGAGACAGCATGTCTGATGCCCAGGCTGGAGTGCAATGGCTTGATCAGAGTTCACTGCAGCTTCAAACTCCCGGGCTGAAGTGCTCCTCTCACGTCACCCTCCTGAGTAGCTGGGACTACAGGCATGCGCCACCATGTCCAGCTAATTTTTTTATTTTTTGTATAAACGAGGTCTCACTATTTCTACAGTGAGTGGCCAGGCTGGTCTCAGACTCCTAGCCTCAAGCGATCCTCCTGCCTTAGCCTCCCAAAGGGCTGGAATTATAGGCGTGAGCTACCTGATCCAGCAGCTTTCAAATGATATGAGCACGATAACTACATTATCTTTTTATTAGGCTCTTTATTGTTCAAACTCCAATTCAAAATATAAATGCATGGTATTTTATTGCTAAGAAATGTTTACTTTTATGGATTTTTGTCTGTATATATGCGCATGTGTGTCTGAAGGGCTGAAGCTTTAGTGGACATGTTTTGAATATGTTGCCCTTCCATTTAAGTAACTTTGCAATCTAGATAGATGGTTGTTTTCATAATATGAAAATGTCTGTATAACTACATGCTAGAACAGATGGATTTTTTCAACTAATGAAAACAGTGTGTTTCTGAAGTACTTTTGAGAGCTGCGTGTAATTGTAGTCTTTCCTTCTAG
Seq C2 exon
GCAGGCATTCAACAACATGTTTTGCTGTACCTTGCAGTGTTCCGAGTTCTACCTTTTTCACTTGTAGGGATTCTAGAGATCAACAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115827-DCAF17:NR_028482:5
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)