RnoALTD0010746-2/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000002039 | Evi5
Description
ecotropic viral integration site 5 [Source:RGD Symbol;Acc:2322879]
Coordinates
chr14:2892737-2924865:+
Coord C1 exon
chr14:2892737-2892837
Coord A exon
chr14:2892838-2892986
Coord C2 exon
chr14:2924636-2924865
Length
149 bp
Sequences
Splice sites
5' ss Seq
TGGGTACGT
5' ss Score
7.7
3' ss Seq
CTTTTTGTCCTTACTCTTAGGTG
3' ss Score
10.56
Exon sequences
Seq C1 exon
AGCTGTAAATTAAATTCAAATCCCCAGCCTCCTAGTCTCCTCCTCCCATCATGGTTACCACCAAGATGACTGCTGTCTTTAGAAACCCTAATAGGAGACAG
Seq A exon
GTAAATGTCTGAAAATGCAGCTTGTTTTTTTTTTTCCTTTTTTTATAGTGCTGATAAAGATGCCCTTAGTGCAGCAGGGGATTTTAACTTTTACTGGATCAGCATCTGTGTACCTCGCTCAGTCTTTAAGGCACAGCAGCTGTTTGTGG
Seq C2 exon
GTGGCGACAGACAAGGTGGCAGAAAAGCTGAGTTCTACTCTCTCATGGGTGAAGAACACAGTCTCGCACACAGTCAGTCAGATGGCCAGCCAGGTGGCAAGTCCATCAGCCTCACTACATACCACATCCTCATCTACCACACTGTCAACACCAACACAGTCACCATCTTCCCCATCAAAGTTGAGTCCAGACGACTTAGAACTCCTGGCTAAGCTGGAGGAACAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002039-1-10,2-10,3-10-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.897 A=NA C2=0.636
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCTAGTCTCCTCCTCCCA
R:
TGGGGAAGATGGTGACTGTGT
Band lengths:
248-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]