RnoEX0033402 @ rn6
Exon Skipping
Gene
ENSRNOG00000002039 | Evi5
Description
ecotropic viral integration site 5 [Source:RGD Symbol;Acc:2322879]
Coordinates
chr14:2906457-2924865:+
Coord C1 exon
chr14:2906457-2906557
Coord A exon
chr14:2916698-2916801
Coord C2 exon
chr14:2924636-2924865
Length
104 bp
Sequences
Splice sites
3' ss Seq
TCTCCCTCCTTTTCCCCAAGGTT
3' ss Score
9.86
5' ss Seq
TCTGCAAGT
5' ss Score
0.21
Exon sequences
Seq C1 exon
CAATCTGGGCTTTCTTTGTTGGTTTTCCTCTTTATGGTCTCGCAAGTTAGTTCATCATTAGGATTCCTGAAGGACTCTGACTTCTGTGTTCTGGATCTGTG
Seq A exon
GTTACATAAACAGTAAGAACTGCTGAGGAGAACAGACTAGCCTGCTGCCTGGAAGAGACTCAGACCTGCCTGAAGGAGAGATTCTCTGACCTGTTGAGCTCTCT
Seq C2 exon
GTGGCGACAGACAAGGTGGCAGAAAAGCTGAGTTCTACTCTCTCATGGGTGAAGAACACAGTCTCGCACACAGTCAGTCAGATGGCCAGCCAGGTGGCAAGTCCATCAGCCTCACTACATACCACATCCTCATCTACCACACTGTCAACACCAACACAGTCACCATCTTCCCCATCAAAGTTGAGTCCAGACGACTTAGAACTCCTGGCTAAGCTGGAGGAACAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002039-'13-10,'13-9,14-10
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.636
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000061630fB5041
Main Skipping Isoform:
ENSRNOT00000061630fB5047
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTCTGACTTCTGTGTTCTGG
R:
TTCCTCCAGCTTAGCCAGGAG
Band lengths:
252-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]