RnoALTD0011378-1/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000018986 | Fbxl19
Description
F-box and leucine-rich repeat protein 19 [Source:RGD Symbol;Acc:1310989]
Coordinates
chr1:199199754-199201434:+
Coord C1 exon
chr1:199199754-199199786
Coord A exon
NA
Coord C2 exon
chr1:199200923-199201434
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
CCTCACCTGTCTCTTTGCAGAAA
3' ss Score
12.14
Exon sequences
Seq C1 exon
GTGAAAGGAGGCCGAGAGAGGCACTTGAAGAAG
Seq A exon
NA
Seq C2 exon
AAACCAAAGCCACCTATAGCTTCTGCTGAGGGCCCAGCAGTGCCATCCCCATCGCCACAGAGGGAGAAGCTGGAGCGTTTCAAGCGTATGTGCCAGCTGCTGGAACGGGTGCCTGATACCTCTTCTTCGTCTTCGGACTCAGACTCTGATTCAGACTCATCTGGCACATCACTTAGTGAGGATGAAGCTCCCGGGGAGGCCCGGAATGGGCGGCGGCCAGCGAGGGGCAGCTCTGGCGAGAAGGAGAACCGTGGGGGACGGCGGGCTATACGCCCTGGCAGTGGAGGACCACTGCTCAGCTGGCCTCTGGGCCCTGCCCCACCACCACGGCCTCCACAGTTGGAGCGGCATGTAGTAAGGCCCCCACCTCGAAGCCCCGAGCCTGACACTCTGCCTTTGGCTGCTGGATCCGACCACCCTCTTCCTCGGGCTGCCTGGCTTCGTGTCTTCCAGCACCTTGGACCCCGGGAGCTATGTGTCTGCATGAGAGTCTGCCGGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018986-11-12,12-12,13-12-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.816
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0064628=F-box=PU(70.5=18.1)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAGAGAGGCACTTGAAGAA
R:
CAGAGCTGCCCCTCGCTG
Band lengths:
257-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]