RnoALTD0011378-2/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000018986 | Fbxl19
Description
F-box and leucine-rich repeat protein 19 [Source:RGD Symbol;Acc:1310989]
Coordinates
chr1:199199754-199201434:+
Coord C1 exon
chr1:199199754-199199786
Coord A exon
chr1:199199787-199199915
Coord C2 exon
chr1:199200923-199201434
Length
129 bp
Sequences
Splice sites
5' ss Seq
GAGGTGTGC
5' ss Score
5.35
3' ss Seq
CCTCACCTGTCTCTTTGCAGAAA
3' ss Score
12.14
Exon sequences
Seq C1 exon
GTGAAAGGAGGCCGAGAGAGGCACTTGAAGAAG
Seq A exon
GTGGGTGGAGATGCCTGCCTCCTCCGAGGAGCGGACCCAGGCAGCCCGGGCCTTCTGCCCCCCAGGGTTCTGAATCCGAGCCAGGCATTCTCATCCTGCCACCCTGGGCTCCCTCCCGAGAACTGGGAG
Seq C2 exon
AAACCAAAGCCACCTATAGCTTCTGCTGAGGGCCCAGCAGTGCCATCCCCATCGCCACAGAGGGAGAAGCTGGAGCGTTTCAAGCGTATGTGCCAGCTGCTGGAACGGGTGCCTGATACCTCTTCTTCGTCTTCGGACTCAGACTCTGATTCAGACTCATCTGGCACATCACTTAGTGAGGATGAAGCTCCCGGGGAGGCCCGGAATGGGCGGCGGCCAGCGAGGGGCAGCTCTGGCGAGAAGGAGAACCGTGGGGGACGGCGGGCTATACGCCCTGGCAGTGGAGGACCACTGCTCAGCTGGCCTCTGGGCCCTGCCCCACCACCACGGCCTCCACAGTTGGAGCGGCATGTAGTAAGGCCCCCACCTCGAAGCCCCGAGCCTGACACTCTGCCTTTGGCTGCTGGATCCGACCACCCTCTTCCTCGGGCTGCCTGGCTTCGTGTCTTCCAGCACCTTGGACCCCGGGAGCTATGTGTCTGCATGAGAGTCTGCCGGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018986-11-12,12-12,13-12-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.816
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0064628=F-box=PU(70.5=18.1)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAGAGAGGCACTTGAAGAA
R:
CAGAGCTGCCCCTCGCTG
Band lengths:
257-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]