MmuALTD0005417-2/4 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000030811 | Fbxl19
Description
F-box and leucine-rich repeat protein 19 [Source:MGI Symbol;Acc:MGI:3039600]
Coordinates
chr7:127750865-127752521:+
Coord C1 exon
chr7:127750865-127750897
Coord A exon
chr7:127750898-127751026
Coord C2 exon
chr7:127752010-127752521
Length
129 bp
Sequences
Splice sites
5' ss Seq
GAGGTGTGC
5' ss Score
5.35
3' ss Seq
CCTCACCTGTCTCTTTGCAGAAA
3' ss Score
12.14
Exon sequences
Seq C1 exon
GTGAAAGGAGGCCGAGAGAGGCACTTGAAGAAG
Seq A exon
GTGGGTGGAGATGCCTGCCTCCTCCGAGGAGCGGACCCAGGCAGCCCCGGCCTTCTGCCCCCCAGGGTTCTGAATCCGAGCCAGGCATTCTCATCCTGCCACCCTGGGCTCCCTCCCGAGAACTGGGAG
Seq C2 exon
AAACCAAAGCCACCTATAGCTTCTGCTGAGGGCCCGGCAGTGCCATCTCCATCACCACAGAGGGAGAAACTGGAGCGTTTCAAGCGCATGTGCCAGCTGCTGGAGCGGGTGCCCGATACCTCTTCTTCCTCCTCGGACTCGGACTCGGATTCAGACTCATCCGGCACATCACTCAGTGAGGATGAAGCTCCTGGAGAGGCCCGGAATGGGCGGCGGCCAGCACGGGGCAGCTCCGGCGAGAAGGAGAACCGTGGGGGACGGCGGGCTATACGCCCTGGCACTGGGGGGCCACTGCTCAGCTGGCCCCTGGGCCCTGCCCCACCACCACGGCCTCCACAGTTGGAGCGACATGTCGTGCGGCCCCCGCCTCGAAGCCCTGAGCCTGATACTCTGCCTTTGGCTGCTGGATCCGACCACCCTCTGCCTCGGGCTGCCTGGCTTCGTGTTTTCCAGCACCTTGGACCCCGTGAGCTATGTGTCTGCATGAGAGTTTGCCGGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030811-15-22,16-22,17-22,18-22-2/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.816
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0064628=F-box=PU(70.5=18.1)
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAAGGAGGCCGAGAGAGG
R:
CCATTCCGGGCCTCTCCA
Band lengths:
242-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types