BtaALTD0008486-2/3 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000040555 | FBXL19
Description
F-box and leucine-rich repeat protein 19 [Source:HGNC Symbol;Acc:HGNC:25300]
Coordinates
chr25:27326171-27327973:+
Coord C1 exon
chr25:27326171-27326203
Coord A exon
chr25:27326204-27326332
Coord C2 exon
chr25:27327462-27327973
Length
129 bp
Sequences
Splice sites
5' ss Seq
GAGGTGTGC
5' ss Score
5.35
3' ss Seq
GCCTCCATCTCTTCCTGCAGAAA
3' ss Score
10.96
Exon sequences
Seq C1 exon
GTGAAAGGAGGCCGAGAGAGGCACCTGAAGAAG
Seq A exon
GTGGGTGGAGACGCCTGCCTCCTCCGAGGATCGGACCCAGGCGGCCCCGGCCTTCTGCCCCCCAGGGTTCTGAATCCGAGCCAGGCTTTCTCGTCCTGCCACCCTGGGCTCCCTCCCGAGAACTGGGAG
Seq C2 exon
AAACCAAAGCCGCCTTTGGCCTCTGCTGAGGGCCCGGCGGTGCCTTCCCCGTCACCCCAGCGGGAGAAGCTCGAGCGCTTCAAGCGAATGTGCCAGCTGCTGGAGCGGGTGCCCGACACGTCCTCGTCCTCCTCGGACTCCGACTCGGACTCCGACTCATCAGGCACATCGCTGAGTGAGGATGAGGCTCCTGGCGAGGCCCGGAATGGGCGACGGCCAGCCCGGGGCAGCTCGGGCGAGAAGGAGAACCGCGGGGGGCGGCGGGCTGTGCGCCCTGGCAGTGGGGGACCCCTCCTCAGCTGGCCCCTGGGCCCCGCGCCCCCACCCCGGCCCCCGCAGCTGGAGCGGCACGTGGTGCGGCCCCCGCCTCGAAGCCCCGAGCCCGACACGCTGCCTTTGGCTGCTGGATCCGACCACCCCCTGCCCCGCGCCGCCTGGCTTCGTGTCTTCCAGCACCTCGGGCCCCGAGAGCTATGCATTTGCATGCGAGTGTGCCGGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040555-9-7,10-7,11-7-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.807
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0064628=F-box=PU(70.5=18.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGAGAGGCACCTGAAGAAG
R:
TCCTTCTCGCCCGAGCTG
Band lengths:
266-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development