BtaINT0061292 @ bosTau6
Intron Retention
Gene
ENSBTAG00000040555 | FBXL19
Description
F-box and leucine-rich repeat protein 19 [Source:HGNC Symbol;Acc:HGNC:25300]
Coordinates
chr25:27326171-27327973:+
Coord C1 exon
chr25:27326171-27326332
Coord A exon
chr25:27326333-27327461
Coord C2 exon
chr25:27327462-27327973
Length
1129 bp
Sequences
Splice sites
5' ss Seq
GAGGTGTGC
5' ss Score
5.35
3' ss Seq
GCCTCCATCTCTTCCTGCAGAAA
3' ss Score
10.96
Exon sequences
Seq C1 exon
GTGAAAGGAGGCCGAGAGAGGCACCTGAAGAAGGTGGGTGGAGACGCCTGCCTCCTCCGAGGATCGGACCCAGGCGGCCCCGGCCTTCTGCCCCCCAGGGTTCTGAATCCGAGCCAGGCTTTCTCGTCCTGCCACCCTGGGCTCCCTCCCGAGAACTGGGAG
Seq A exon
GTGTGCCGGGGACCTCCCTCCCCTTCCCACTTTCCTTTGCCCCACCCTCTATCCTGGAGACAGAAATCTGTCCTTTCCTGCCTACCTTGTCCTACCCCAGCCCCGCTTGGCCACGATGGGCAGGCAATTGGGCCCCTGGGACGAGTAGAGGGGAAGAGTGGGTTGGGGCCAGGCCACAAGAGCCCTGGACTTGCCAAGAACCCTTGGGGTATCATTTGACCCATTTGCCTCATCTTTCCAAACCTTTAAGGGGAAAGAACGGAGTTCAAATCCCTGTTCAACCATTGCCTTGCTGATTGGTCTTGGCAACTTATCAGCTGCTCCGGGCTTCAGTTTCCTCGTCAGTGAAATAGAAATGATACCACTTCCCTTGCCCGGTCTATGCCACAAAGCTGTTTAATGACATTAAATGAGCTTTGTAAACTGCAAAGGGACTAGATTTGAGGGAAGTAAGGCCCAGAGAGGTTTGAAGACTTGTCCAAGGTCACATAGCAAAGCTGGCATTCAGCTGTCACTTTGCACTGACACATCAGATGCCAGGGTCTGCTTGACTGCACTCAGATTCTTCCTCTGCCATTTGTCAGATTGTCACCTTGGGCAAGTTCCATAATCTCTTGGAGCCTACATTTCCTTATATCTGGAAAGAGTGGCCCAAGTTGCCACTGCATCCCAGCACTGTGAGGATGTCATGAGTCATCGAGGGTGGGAGGCTCCGCCCAGGTCCGGATGATCACTGTTACTCTTGTCTCATTGCAGAGACGCTCGAAGTTGTTTGGTCCAGCTTTCTGTGTTGTAGATGATGAGAAAGGGGCTTCCCAAGGTCACAGAGAGAATTGATAGCCAGGTCAATATGCAAAACTAGATCTGTAACTGTTCTCCACACCTCACTGCTTTTGGAAACTCATAAGCTATCGAGACACATAAGTCTTTGAATTCTTTGCATCAGCACCTTCCTGTGACAGATAAGGAAAGTGAGAAGTCCAGAGAGGAGTATGACTTGACTGAGGCGCCACAGGGCAGGAACTCAGGACTGTCCCTCTGGCTATTCATCCCCCCCGGTGACTCCTCGGGGGTCGGGGGTGGGAAGGCAGGTGCCAGGCCCTAGAACAGCCTCCATCTCTTCCTGCAG
Seq C2 exon
AAACCAAAGCCGCCTTTGGCCTCTGCTGAGGGCCCGGCGGTGCCTTCCCCGTCACCCCAGCGGGAGAAGCTCGAGCGCTTCAAGCGAATGTGCCAGCTGCTGGAGCGGGTGCCCGACACGTCCTCGTCCTCCTCGGACTCCGACTCGGACTCCGACTCATCAGGCACATCGCTGAGTGAGGATGAGGCTCCTGGCGAGGCCCGGAATGGGCGACGGCCAGCCCGGGGCAGCTCGGGCGAGAAGGAGAACCGCGGGGGGCGGCGGGCTGTGCGCCCTGGCAGTGGGGGACCCCTCCTCAGCTGGCCCCTGGGCCCCGCGCCCCCACCCCGGCCCCCGCAGCTGGAGCGGCACGTGGTGCGGCCCCCGCCTCGAAGCCCCGAGCCCGACACGCTGCCTTTGGCTGCTGGATCCGACCACCCCCTGCCCCGCGCCGCCTGGCTTCGTGTCTTCCAGCACCTCGGGCCCCGAGAGCTATGCATTTGCATGCGAGTGTGCCGGACTTGGAGCCGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040555:ENSBTAT00000056997:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.807
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0064628=F-box=PU(70.5=18.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAGAGAGGCACCTGAAGAA
R:
CAGGAGCCTCATCCTCACTCA
Band lengths:
344-1473
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]