MmuINT0063074 @ mm10
Intron Retention
Gene
ENSMUSG00000030811 | Fbxl19
Description
F-box and leucine-rich repeat protein 19 [Source:MGI Symbol;Acc:MGI:3039600]
Coordinates
chr7:127750865-127752521:+
Coord C1 exon
chr7:127750865-127751026
Coord A exon
chr7:127751027-127752009
Coord C2 exon
chr7:127752010-127752521
Length
983 bp
Sequences
Splice sites
5' ss Seq
GAGGTGTGC
5' ss Score
5.35
3' ss Seq
CCTCACCTGTCTCTTTGCAGAAA
3' ss Score
12.14
Exon sequences
Seq C1 exon
GTGAAAGGAGGCCGAGAGAGGCACTTGAAGAAGGTGGGTGGAGATGCCTGCCTCCTCCGAGGAGCGGACCCAGGCAGCCCCGGCCTTCTGCCCCCCAGGGTTCTGAATCCGAGCCAGGCATTCTCATCCTGCCACCCTGGGCTCCCTCCCGAGAACTGGGAG
Seq A exon
GTGTGCCGGGGACCTCCTTCTCTCCCCCTCCCCCCTCCCTTGTCATGAAGACTAAGACCTGTCCTTTCCTGCTCACTTTGTTTTGCCCTACCCCTACATGGTCCCCATGGACCCTTGGGAGGAGTTGGGTGGGAGAATAGCCTTGGTCCAGGTCGCAGGAACTTGATTTCCAGCAGCCATTAGGCTGTGTGCAGCCCACTTTCCTCAGTTGTCTAAGCCTAAGTGGAAAGAACCAAATTTCAATTTCTTGCCAGATCACTGATTCTCGATAGAGCCTTGGCAACCTGTTGTCTACTCTGGGCTTGCAAATGGCTTTTCTGGTTTGTGAGATGAAGACAGACCACTTTCCTTCCCCATTCTCCCATCTCACAGACAAGATAAATGCAGTGAAATAGAAAATAACGGGCCCAGAGAAAAAGACTGGCCCAAGGTCACGTGGCTAAACTTGAACTCAGATACTACTTTGCACTGGTAATCTGAACACAGAGTCCTGCCTGTCCAAGTCCTTCACCAAATACCAGTTTGTAACCTTGGACAAGTCACCTAGTCTCTTTGAGCCACACTCAGTTTCCTTGTTGAAAAGGAGTAGCCGAGTTGTTCCTTGAGTCAGAACAAGGATGCGCTACGGCAAGACAGGGGGTGATTGCTTCCTGTACTGTGGCTTGTCTAGTCTCGCTGTTGCATGTCGTAGATGGTCAAGCAAGTCCTTTCTATGCCCCAGAGTTGAAAAGGCAAGCCAGCACTTTACACATGTGCTGGGAGGCTCACAAGCCACTGACTGACCCACAGGCTAGCTGGACTTTGAATAGTGGCTTCACATTGGAGATAAGGAAGCTGAAGTCCAGTGATGGACGGGGGTTTGGGAACAGTCAGGAACTTGGGCTGTGTCTCCCTGGGCTGTTCATCCTCTGCTGACTCCTTTGGGTGAGTGGTTGGGAAAGAGCACTCTAGGACCTAGTACAGCCTCACCTGTCTCTTTGCAG
Seq C2 exon
AAACCAAAGCCACCTATAGCTTCTGCTGAGGGCCCGGCAGTGCCATCTCCATCACCACAGAGGGAGAAACTGGAGCGTTTCAAGCGCATGTGCCAGCTGCTGGAGCGGGTGCCCGATACCTCTTCTTCCTCCTCGGACTCGGACTCGGATTCAGACTCATCCGGCACATCACTCAGTGAGGATGAAGCTCCTGGAGAGGCCCGGAATGGGCGGCGGCCAGCACGGGGCAGCTCCGGCGAGAAGGAGAACCGTGGGGGACGGCGGGCTATACGCCCTGGCACTGGGGGGCCACTGCTCAGCTGGCCCCTGGGCCCTGCCCCACCACCACGGCCTCCACAGTTGGAGCGACATGTCGTGCGGCCCCCGCCTCGAAGCCCTGAGCCTGATACTCTGCCTTTGGCTGCTGGATCCGACCACCCTCTGCCTCGGGCTGCCTGGCTTCGTGTTTTCCAGCACCTTGGACCCCGTGAGCTATGTGTCTGCATGAGAGTTTGCCGGACTTGGAGCCGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030811:ENSMUST00000186207:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.816
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0064628=F-box=PU(70.5=18.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCACTTGAAGAAGGTGGG
R:
CCTCTCCAGGAGCTTCATCCT
Band lengths:
344-1327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types