RnoINT0059732 @ rn6
Intron Retention
Gene
ENSRNOG00000018986 | Fbxl19
Description
F-box and leucine-rich repeat protein 19 [Source:RGD Symbol;Acc:1310989]
Coordinates
chr1:199199754-199201434:+
Coord C1 exon
chr1:199199754-199199786
Coord A exon
chr1:199199787-199200922
Coord C2 exon
chr1:199200923-199201434
Length
1136 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
CCTCACCTGTCTCTTTGCAGAAA
3' ss Score
12.14
Exon sequences
Seq C1 exon
GTGAAAGGAGGCCGAGAGAGGCACTTGAAGAAG
Seq A exon
GTGGGTGGAGATGCCTGCCTCCTCCGAGGAGCGGACCCAGGCAGCCCGGGCCTTCTGCCCCCCAGGGTTCTGAATCCGAGCCAGGCATTCTCATCCTGCCACCCTGGGCTCCCTCCCGAGAACTGGGAGGTGTGCCGGGGACCTCCTCCTTCCTCCCCTCCTCCCCACCCTCTTCCATCATGGAGACTGAGACCTGTCCTTTCCTGCTCACTTTGTCTTGCCCTATCCCTACATGGTCCCTATGGACCCCTAGAAGGAGTTGGGTGGGAGAATAGTCTAGGTCCAGGTCATAGGAACCCCTGATTTCCAACAGCCATTAGGATAGTGTTTAGACCGTCTTAGTTTTCTAAGCCTAAGTGGAAAGAACCGAATTTAAATTGCTTGCCAGATCACTGATTCTTTACATTCTTTACATGGTCTTGGCAACTTGTTACCTACTCTGGGCCGGCAAATGGCTTTTTTAATCTGTGAGATGAAGACAGACTACTTTCCTTACCCCTTCTCTCATCTCACAGCCAGATAAATCCAATGAGATATAAAAGTAATGCGCCCAGAGAGGTTAAAGATTGGCCCAAGGTCACACGGCAAAGCTCGAATTCTGATACTACTTTTTACTAGTAATCTGAACACAAGGTTCTGCCTGTCCAAGCCCTTCACCAAATACCAGTTTGTAACTTTGGACAAGTCACCTAGTCTCTTTGAGCCACACTCAGTTTCCTGGATGAAAAGGAGTGGCGTGGCCCAAGTCACCTTTGAGTCAGAAGAAGGATGCTCTACACCAAGATGGGAGTGATGGCTGTTCCTACACTGTGGGCTTGTCTAGTTTAGCTGTTCCACATTGTAGATGGTCACGCAGGTCCATTCTACATCCCAGAATTGAAAAGGCAAGCCAGCACTTTACACAGGTGCCGGGAGGTTCACGAGCCATTGACTGACCCACCAGGCTATCTGGACTTTGAATAGTTCCCTCACACTGTAGATAAGGAAGCTGACGTCCAGTGATGGACAGTTTGGGAACAATCAGGAACTTAGGACTGTGTCTCCTGGGGCTGGTCATCCTCTGCTGACTCCTTTTGGGTGAGTGGTTGGGAAAGTGCACTCTAGAACCTAGTACAGCCTCACCTGTCTCTTTGCAG
Seq C2 exon
AAACCAAAGCCACCTATAGCTTCTGCTGAGGGCCCAGCAGTGCCATCCCCATCGCCACAGAGGGAGAAGCTGGAGCGTTTCAAGCGTATGTGCCAGCTGCTGGAACGGGTGCCTGATACCTCTTCTTCGTCTTCGGACTCAGACTCTGATTCAGACTCATCTGGCACATCACTTAGTGAGGATGAAGCTCCCGGGGAGGCCCGGAATGGGCGGCGGCCAGCGAGGGGCAGCTCTGGCGAGAAGGAGAACCGTGGGGGACGGCGGGCTATACGCCCTGGCAGTGGAGGACCACTGCTCAGCTGGCCTCTGGGCCCTGCCCCACCACCACGGCCTCCACAGTTGGAGCGGCATGTAGTAAGGCCCCCACCTCGAAGCCCCGAGCCTGACACTCTGCCTTTGGCTGCTGGATCCGACCACCCTCTTCCTCGGGCTGCCTGGCTTCGTGTCTTCCAGCACCTTGGACCCCGGGAGCTATGTGTCTGCATGAGAGTCTGCCGGACTTGGAGCCGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018986:ENSRNOT00000065187:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.816
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0064628=F-box=PU(70.5=18.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAAGGAGGCCGAGAGAGG
R:
CAGAGGCCAGCTGAGCAGT
Band lengths:
342-1478
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]