HsaALTD0002496-2/4 @ hg38
Alternative 5'ss
Gene
ENSG00000099364 | FBXL19
Description
F-box and leucine rich repeat protein 19 [Source:HGNC Symbol;Acc:HGNC:25300]
Coordinates
chr16:30928467-30930584:+
Coord C1 exon
chr16:30928467-30928499
Coord A exon
chr16:30928500-30928628
Coord C2 exon
chr16:30930073-30930584
Length
129 bp
Sequences
Splice sites
5' ss Seq
GAGGTGTGC
5' ss Score
5.35
3' ss Seq
TCAACCCTGTCTCCCTGCAGAAA
3' ss Score
11.94
Exon sequences
Seq C1 exon
GTGAAAGGAGGCCGAGAGAGGCACCTGAAGAAG
Seq A exon
GTGGGTGGAGACGCCTGCCTCCTCCGAGGATCGGACCCAGGCGGCCCGGGCCTGCTGCCCCCCAGGGTTCTGAATCCGAGCCAGGCTTTCTCATCCTGCCACCCTGGGCTCCCTCCCGAGAACTGGGAG
Seq C2 exon
AAACCAAAGCCGCCTTTGGCCTCTGCAGAGGGCCCAGCGGTGCCGTCCCCGTCCCCGCAGAGGGAGAAGCTAGAGCGTTTCAAGCGGATGTGCCAGCTGCTGGAACGGGTGCCTGACACCTCCTCTTCCTCCTCGGACTCAGACTCCGACTCCGACTCTTCGGGCACATCGCTGAGTGAGGACGAAGCCCCCGGCGAGGCCCGGAATGGGCGACGGCCAGCCCGGGGCAGCTCTGGCGAGAAGGAGAACCGTGGGGGGCGGCGGGCTGTGCGCCCTGGCAGTGGGGGGCCCCTACTCAGCTGGCCCCTGGGCCCAGCCCCACCACCCCGGCCTCCACAGCTGGAGCGGCACGTGGTGCGGCCCCCGCCTCGAAGCCCTGAGCCCGACACACTCCCCTTGGCTGCTGGATCCGACCACCCCCTGCCCCGGGCCGCCTGGCTTCGCGTCTTCCAGCACCTCGGGCCGCGGGAGCTGTGTATCTGCATGCGAGTCTGCCGAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000099364-11-15,12-15,13-15,14-15-2/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.802
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0064628=F-box=PU(70.5=18.1)
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGAGAGGCACCTGAAGAAG
R:
TCCTTCTCGCCAGAGCTGC
Band lengths:
266-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains