RnoALTD0011721-2/5 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000058359 | Fkbp8
Description
FK506 binding protein 8 [Source:RGD Symbol;Acc:1308670]
Coordinates
chr16:20651060-20652985:-
Coord C1 exon
chr16:20652885-20652985
Coord A exon
chr16:20652852-20652884
Coord C2 exon
chr16:20651060-20651346
Length
33 bp
Sequences
Splice sites
5' ss Seq
CAGCACGAG
5' ss Score
-16.86
3' ss Seq
ATGCTTAACTGTTCCCCTAGGGC
3' ss Score
8.59
Exon sequences
Seq C1 exon
CCAATAAGCGTGGCAGCCGCGGCGTGACCAGCCAATGGGCACGCGGGGGCGGGGCTGCGCATCTGAAGCTGTTTCCCGAGGCGCGGCGGCCGCGACTGGGG
Seq A exon
GTGGGGAGGGGGGCACAGGACCCCAAGCCGCAG
Seq C2 exon
GGCCAGTTCCTGATCCCCCAGCAGCATGGCGTCTTGGGCCGAGCCCTCTGAGCCTGCTGCCCAGCTACTTTGTGGGGCCCCACTCCTGGAGGGCTTTGAGGTGCTTGATGGGGTTGATGATGCAGAGGAGGAAGATGACCTAAGTGGGTTGCCACCACTAGAGGATATGGGACAGCCTACGGTGGAGGAGGCTGAGCAGCCTGGAGCCCTAGCTCGGGAGTTCCTGGCAGCCACAGAGCCTGAGCCAGCCCCAGCCCCCGCCCCGGAAGAGTGGCTGGACATTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058359-2-0,3-0,4-0,5-0,6-0-2/5
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.830
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCTGAAGCTGTTTCCCGA
R:
CCCACAAAGTAGCTGGGCAG
Band lengths:
119-152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]