RnoALTD0012207-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000017925 | Gapvd1
Description
GTPase activating protein and VPS9 domains 1 [Source:RGD Symbol;Acc:1307479]
Coordinates
chr3:13796058-13798118:-
Coord C1 exon
chr3:13798032-13798118
Coord A exon
chr3:13797919-13798031
Coord C2 exon
chr3:13796058-13796192
Length
113 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGC
5' ss Score
5.61
3' ss Seq
ATCTCTTCCTGTTTCAACAGGGC
3' ss Score
11.1
Exon sequences
Seq C1 exon
GTTGGCCGCCTTTTGCAGCAGTTAGCAATGACTGGCACTGAGGAAGGAGATCCCCGGACCAAAAATAGCCTTGGGAAATTTGACAAA
Seq A exon
GTAGGAATGAATGTTGTGTCATGTGAAATACAGTTGGTAGACTGTAAGATGTCTGGGAGTGCTAGCCCACACCGTGATCTCAGTTGAGGTGGGAGGATTGCCTTGAGTCCAAG
Seq C2 exon
GGCTGTGTCGCTGCTTTCCTTGATGTCGTAATCGGAGGCCGTGCAGTAGAGACTCCACCAATGTCCTCTGTTAATCTTCTGGAAGGCTTGAGCAGAACTGTGGTGTATATAAGCTACAGTCAGCTTATTACTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017925-11-6,12-6-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.241 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=PD(4.5=31.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGCCGCCTTTTGCAG
R:
GCTGACTGTAGCTTATATACACCACA
Band lengths:
211-324
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]