RnoALTD0012517-2/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000021765 | Gli4
Description
GLI family zinc finger 4 [Source:RGD Symbol;Acc:1560906]
Coordinates
chr7:116671916-116673344:+
Coord C1 exon
chr7:116671916-116672016
Coord A exon
chr7:116672017-116672388
Coord C2 exon
chr7:116673192-116673344
Length
372 bp
Sequences
Splice sites
5' ss Seq
TATGTAAGC
5' ss Score
4.2
3' ss Seq
ATGGTTTTCATTTTCCTCAGGTC
3' ss Score
10.05
Exon sequences
Seq C1 exon
TGGTCCTCCGGGGTCCAGAGCGTCCCGGAATCGGGGGCGGGCCTCCCAGAGGCGGAGCATTTCCGGCCGGCGCGCGCGGGCGGCCTCCTCCCTTTCGCAAG
Seq A exon
GTGAGTGGTCGCCCCTCCCAGTGGTTCCAATCGGGACCCTTCGTTTCATGCGCGTGGGTGCCTATCTCTTTCTCCCGCAGTGACTTCGGTCACCCCCGGCCCGGGTCCTCTGAGTGGTTTCAACCTAGGAGACCCTGTAGGGCGGCCGTACAGTGTCCGCCCCGCGCCAGCCCCCAGCGTCTCCGCCTCCCGGCGGGTGCTGCTGCATCTCACCCCGTGTCATCCTCTCTCCCACTCGTCACTTTGTGGAAGAAAACTGGGCTCTCTCTTTGGGCTTCATCCGTTTATGGCAAACCAAGTTAAGGAAAAATGCCGCCCCCTTTTTATTTTTCTCAAGTCTCGTGTAATTCAGGCTGACGTCGAATTTGCTAT
Seq C2 exon
GTCCCAAGGTGCCTCCTTGAGCAGGACTCAGGAAGATGGCTGCACTAGAGGGTGTAGAGGAGGCCCCTCCTGTCTTATCACTCAACAGTCTCTCATCACCAGGGACACCTGGAGACCAGCACCATGTGGCACTCCATGGACACCCTCACCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021765-0-1,1-1,2-1-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCCTCCGGGGTCCAG
R:
CGTGGTGAGGGTGTCCATG
Band lengths:
254-626
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]