RnoALTD0012517-3/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000021765 | Gli4
Description
GLI family zinc finger 4 [Source:RGD Symbol;Acc:1560906]
Coordinates
chr7:116671916-116673344:+
Coord C1 exon
chr7:116671916-116672016
Coord A exon
chr7:116672017-116672453
Coord C2 exon
chr7:116673192-116673344
Length
437 bp
Sequences
Splice sites
5' ss Seq
GAGGTACGC
5' ss Score
9.4
3' ss Seq
ATGGTTTTCATTTTCCTCAGGTC
3' ss Score
10.05
Exon sequences
Seq C1 exon
TGGTCCTCCGGGGTCCAGAGCGTCCCGGAATCGGGGGCGGGCCTCCCAGAGGCGGAGCATTTCCGGCCGGCGCGCGCGGGCGGCCTCCTCCCTTTCGCAAG
Seq A exon
GTGAGTGGTCGCCCCTCCCAGTGGTTCCAATCGGGACCCTTCGTTTCATGCGCGTGGGTGCCTATCTCTTTCTCCCGCAGTGACTTCGGTCACCCCCGGCCCGGGTCCTCTGAGTGGTTTCAACCTAGGAGACCCTGTAGGGCGGCCGTACAGTGTCCGCCCCGCGCCAGCCCCCAGCGTCTCCGCCTCCCGGCGGGTGCTGCTGCATCTCACCCCGTGTCATCCTCTCTCCCACTCGTCACTTTGTGGAAGAAAACTGGGCTCTCTCTTTGGGCTTCATCCGTTTATGGCAAACCAAGTTAAGGAAAAATGCCGCCCCCTTTTTATTTTTCTCAAGTCTCGTGTAATTCAGGCTGACGTCGAATTTGCTATGTAAGCAATGATGCCCTTGAATTTATTATTCTGCAGCCTTCACATCCCAAGTGTTGGGATTAGAG
Seq C2 exon
GTCCCAAGGTGCCTCCTTGAGCAGGACTCAGGAAGATGGCTGCACTAGAGGGTGTAGAGGAGGCCCCTCCTGTCTTATCACTCAACAGTCTCTCATCACCAGGGACACCTGGAGACCAGCACCATGTGGCACTCCATGGACACCCTCACCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021765-0-1,1-1,2-1-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCCTCCGGGGTCCAG
R:
CGTGGTGAGGGTGTCCATG
Band lengths:
254-691
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]