RnoALTD0014717-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000054561 | Isg20
Description
interferon stimulated exonuclease gene 20 [Source:RGD Symbol;Acc:1306407]
Coordinates
chr1:140602173-140602591:+
Coord C1 exon
chr1:140602173-140602273
Coord A exon
NA
Coord C2 exon
chr1:140602554-140602591
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CCCCACCTCCCCATCCTCCGGAC
3' ss Score
0.71
Exon sequences
Seq C1 exon
AACAAAACGGCTCCGCTTGATGAGTCCCACTTCCCAAAGTGAGCTAAAGTAGCTGAGAAGTAGAAACAGAAGGCAGAAGAGAACCCAGGGCACTGGGACAG
Seq A exon
NA
Seq C2 exon
GACTTCCTGAGGGTCTGAGGAGCATGGCAGACAGCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054561-1-1,2-1-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTGATGAGTCCCACTTCCC
R:
TCCTCAGACCCTCAGGAAGTC
Band lengths:
108-118
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]