RnoALTD0014943-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000004956 | Jade2
Description
jade family PHD finger 2 [Source:RGD Symbol;Acc:1309152]
Coordinates
chr10:37272057-37274601:-
Coord C1 exon
chr10:37274484-37274601
Coord A exon
chr10:37274457-37274483
Coord C2 exon
chr10:37272057-37272188
Length
27 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
3' ss Seq
ACTCCCCTTCTCTAACACAGAGC
3' ss Score
7.43
Exon sequences
Seq C1 exon
GTGAGGAACCTGTGCTACATGGTGACAAGGCGGGAGAGAACGAAGCACACCATCTGTAAGCTTCAGGAGCAGATATTCCATCTGCAGATGAAACTCATTGAGCAAGATCTTTGCAGAG
Seq A exon
GTAGGCACAGCGCCCCCTGCTGGGAAG
Seq C2 exon
AGCCTTCTGGGAGGAGATCAAAGGGCAAGAAGAATGACTCAAAAAGGAAAGGCCGAGAGGGTCCCAAGGGCAGCAGCCCTGAGAAGAAAGAAAAAATGAAGGCTGGGCCGGAGTCTGTGCTGGGGCAGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004956-25-17,26-17-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=NA C2=0.978
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAGAACGAAGCACACCAT
R:
TTGCCCTTTGATCTCCTCCCA
Band lengths:
114-141
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]