RnoINT0076938 @ rn6
Intron Retention
Gene
ENSRNOG00000004956 | Jade2
Description
jade family PHD finger 2 [Source:RGD Symbol;Acc:1309152]
Coordinates
chr10:37272057-37274601:-
Coord C1 exon
chr10:37274484-37274601
Coord A exon
chr10:37272189-37274483
Coord C2 exon
chr10:37272057-37272188
Length
2295 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
3' ss Seq
ACTCCCCTTCTCTAACACAGAGC
3' ss Score
7.43
Exon sequences
Seq C1 exon
GTGAGGAACCTGTGCTACATGGTGACAAGGCGGGAGAGAACGAAGCACACCATCTGTAAGCTTCAGGAGCAGATATTCCATCTGCAGATGAAACTCATTGAGCAAGATCTTTGCAGAG
Seq A exon
GTAGGCACAGCGCCCCCTGCTGGGAAGGTGTGTCTTTGGGGCCTGGAAGAGCACGGAGCCCTTCGCTGTCCCTTCTCACCGACATTATAATCATTATCAGGTCCATATGGGAACCTGTCAAGGCCCTGGCTATGCTGATAGCAAGAGTTTGGACTATGGCTTTCTCAAGCCTCTTCCCTTGGGGGCATCACTGGTGCCCTGGGATAGCCCAGTTCTGTCGACGGTGGCTTAGCTTGCACAAGGACAGGTGCAGACCCACAATCTTCGTGGCTCTGCTGGGTTCAAGACAGGCCGGAGCTGGTCAGCCCATGCCTCCTTCCCCCTCAAATCCCCCCCTCCGCACAACAAACCCTGATATACATAAGTAAGGGTTCAGTCCTCAGAAGGCAGCTGTGTGGGGATGAGGCTGGGTCTCCCTCTCTGTGGTGTCATGGGATGAAATTCAGGCTCTGATCAGCTGTGCATAGCATGCATTTAGCAGATGGAGAAACCAGGAGCAAAGGTCTTGACACTGACCGAATTGGTTAGTTAACGGGGCTAGTTAAGGAAAATAGGCTTAACGCACACACACCCATGCACACACGGCACGGGAATGTTATTTACGCTCAGATGTTGAACATACCCAGCAGACACGGCTAGGTAGAGAAAGCTTTGGAGATGTGCCTGCCACTACCGACTCAGCTGATGGGTCATTCTGGGGCTTGAGTTGAGGAGGTGAGAGCTACTGGGCTGCTGCTGTTAAGAGTGAATGGTTACCCCCATTTCTGCCAGTAGCCGAGTTGCTCCATTTAACCTTTGGGGTTACTAGTATTCATTAAAGCCAAGTGTGGTGGTACACGCCTGTAGAAGAAGGGGTCTTAGAGGCTCAGGGATTAAGAGTGCTGGCTGCTCTTCCAGTGGCTATGGCTTCAATTGCTGGCACCACATGGTAGCTCACAACTTCTATACCTCCAGTTCCAGGGCATCCAGCGCCCTCTTCTGGCCTCTGAGGAACTGGGAGCAATGTAGCTTACTTGGTAGGGTGATTGCCTAGTCTGCACGAAGCCCTCCCTGGGTTTGATCCCCAGCATTAAAACCAGACGTGTAGGTACACATCTGATCCTAGCGTTTGGGAGGTAGAGGCAGGAGGATAAGGAGTTCCAGGCTGTGCACCGCTGCTTAGAAAGTTCGAGACCCTCCTGGACTTAGAAGAACCGTTTTCTTACCCATATTTGTTTTATGTGTGTGTTGTCTGCATATCTGTATGTGTGCTACATGTGTCCCTGGTGCCTGCCTGTGAAGGTCAGCAGAGCGTATCAGATCACCCCTGGAACTGGGGGTTACAGATGGCCAAGTACCACCATGCCGGGTGTTGACCCATGCAGGTGCCGGGAGTTGACCCAGCATAATCAAAGAGGGGTAAAAAGGAGAAGAGAAAATTACTGTGTTGATTGCAGAGGTCAGAGTAGGTCATGGCACTGTGGAACTGGCAGTCATGAAGCCTCCAGAGCTCTCCTGCCCAAGTACAGAAAAAAAGTGGAGCCCCAGCGTCTGCAGTCAGTGGTGGTAGAAAGGGTAGAGGTGATGAGGGGAACCTTTCTGCACTTAGGCCACACAAAGTGCCCGTGTTCAAGGAAGCACCTCTGGCACAGGATCCTACACACCAGAGAGTCTATACCCCAACCTAGAGTCTGGGGACCCTGCAAGTTCCTTGTCTGGGGTAGAAATCATCACTGCATCCTCAGTGCCTGAAGTGGACGCACTCGGGGGAGGGAGGGTGCTTAAGGAGGCTGTAGGGTAACCAAGGTGAGACATGTAAGGTCCGGGGGCCTGAGAATGTCAGGCGTGGGGTCTGAGTTACAGGCAAGGAGACTAATTGGCAAGGTCTAATTAGAGGCTCTGGGGACTGTGAAGAGCTCAGAACACGTCTCTACCTTCTTTTGACATTGTTCCCAGAAGCTTCCCTGCCTCTGCTGGGTAGCTGGGGTCTTGAGGAGCTTGGCCATGGTGGCAGGCCCAGAATCTAAGCCTTTTGTCTTCAGATGATGTCTTTCTGGCCTATATCCAGCTCCTTATCCTGGCATCCTGTCCACAGAGCATCCTTCCCCACCCACCAGAACTCTCCAAGGTCTGTGGCGTTTGTAGGTCACACTGAAGTCCAGGTCCCACGAGGACTTCTTGTGCCTACGTCTATCCTTCACAGAACCGTGGACCCTGTGTCTGGCACACTGACCCTAACCTTGGTACCATGGTTGGCAGACTTGATGGACAGTCCCCAGGCAGCCGCTCAGGTTTAACTCCCCTTCTCTAACACAG
Seq C2 exon
AGCCTTCTGGGAGGAGATCAAAGGGCAAGAAGAATGACTCAAAAAGGAAAGGCCGAGAGGGTCCCAAGGGCAGCAGCCCTGAGAAGAAAGAAAAAATGAAGGCTGGGCCGGAGTCTGTGCTGGGGCAGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004956:ENSRNOT00000043343:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=NA C2=0.978
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]