MmuINT0118722 @ mm10
Intron Retention
Gene
ENSMUSG00000020387 | Jade2
Description
jade family PHD finger 2 [Source:MGI Symbol;Acc:MGI:1924151]
Coordinates
chr11:51818497-51821196:-
Coord C1 exon
chr11:51821079-51821196
Coord A exon
chr11:51818629-51821078
Coord C2 exon
chr11:51818497-51818628
Length
2450 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
3' ss Seq
TAACTCTTTCTCCAACACAGAGC
3' ss Score
6.67
Exon sequences
Seq C1 exon
GTAAGGAACCTGTGCTACATGGTGACAAGACGGGAGAGAACGAAACACACCATCTGTAAACTTCAGGAGCAGATATTCCATCTACAGATGAAACTTATTGAGCAAGACCTTTGCAGAG
Seq A exon
GTAGGCACGGCGCCCCCTGCTGGGAAGATGTGTCTATGCGGCCTGGAAGGGCCTGGGACCAGAACCCTTCAGTCAGGTTCCTTCTCACGGACATAACAGATCCACGTGGGAACCAGTGAAGGCCGTGGTTGTGCTGATAGGCGAGAAAACAGAGTTTGGACTGTGGCTTTCAAGCCTCTACCCTCAGGGGCATCACTGGGATAGCCCAGTTCCATCCACAGTGGCTTAGCTTGCACAAGGACAGGTGCAGACCACAGTCTTCCTGACTCTGCTGGGCTCAAGACAGGTCAGAGCTGGCCAGCTCCCCTGAACCCTGGTAAGCGTAGGGTTCAGTCTTCAGGAAGGCAGCTGTGTGGAGATGTGGCTGTGTCGCCCTCTCTGTGGTGTCATGTGATGAAACTCAGGCTCTGATCAGATGTGTCTTCTATCCTTTAGGTATAACATGCATTTAGCAGATCGAGAAACCAGGAGCAAAGGTGTTGACATTGGCTTAATTGGATAGTTATGGAGTCTGGACATGTGAAGGGAAGATAAGCTTAACACGCACCCCCCCACACAGGAACATTATTTACACTCAGACGTTGAACATACACAGCAGAAGGCAGCTAGGTAGAGAGAGCTTTGGAGATATGCCTGCCGCTACCGACTCAGCTTGTGGGTCATTCTGGGACGTGAGAAGAGGAGGGAGTGCTGCTGCGAGTCTTCAGAGGGAATGGTTGCCCCTTTTCTGCCCGTAGCTGAGTTGCTCCATTTACCCTTTGGGATCGCCAGCATTCATCAAAGCCAAGTGTGGCAGTACATACCTGTAGAGGAGGGGGTCTGGAGGTTCAGGGATTTAGTACTGGCTGCTCCTCCAGTGGCTATGGCTTCAATTGCTGGCACCCATGTGGTAGCTCACAACTGTCTATACCTCCAGTTCCAGGGCATCCAGCGCCCTCTTGTGGCCTCTGAGGAACTGGGAATGTAGCTTACTTTATAGGGCATGAAGCCTCCCTGGGTTTGATCCCCAGCACTGGCTAAAACCAGATGGTGCAAACACACATCTAATTCTAACCCTTGGGAGGTAGAGGCAGGAAGATCAAGAATTCCAGGTTATGCACTGCTACTTAGAGAGTTCGAGACCATCCTGGACTATGTAAGAACCACTTTCTTACACATAGTTAGTTTACATAGGTGTTGTCTGCATATTTGTACATGTGATACATGTGTCCCTGGTGTCTGCCTATGAAGGTCAGATCCCCTGGGACTGGAGTTACAGATGGTCACGTGCCACCGTGCAGGTGCTGGGAGTCAAACCCAGCGTAATCAAAGGGGACAAAAAGAGAGAAGAAAATGACTGTTGCTAATGACAGAGGTCAGCGTAGGTCACGGCCCCATGGAACTGACAGTCATGAAGCCTACCCAAGTCCAGAAGAGAGGAAAGTGGGGTCCCAGGCTGTGCAGTCAATCATGGCACACGGGGTGGAAGCGATGAGGGGAACTCTACTGTACTTAGAGACCACACACAAGTGTCAGTGTTCAAGGAGGCTGAGGGCAGCACGGTAGGAATAGCACCTTCTGTCATGGTCTCCTATACACCAGAGGGTCTGCACCCTAACCTAGAGTCTGAGGACCCTTCAAGCTCCTTGTGAGTAGGAACCATTGTTAAGAGCATTGCATTGCCAATGCCTAAAGTTGATGCACATGGAGGAGAGAGGGGCTTAAGGAGGCTGTAGGGTAACCAGGGTGAGACATGGAGGGCTGTAACCAAGGTGAGACAGACATGTAAGGCTGTAACCAGGGTGAGACAAACATGTAAGGCTGTAACCAGGGTGACACATGGACGGTCTAGGGGCCTTGTAATACTAGGTGTGGGGTCTGAGTTACAGGCCGGGAGACTGAGGTCTAATTAGAGGCTCTGGGGACTGAGAAGAGCTCAGAACACAGAGCTCTGCCTTCTTTTGACATTATTCCCAGAAGCCTTCCTGCCTCCCTGCCCCTGCTGAGCAGCCGGGGACTCATCTTTTGCAGACCAAAGGGCAAAGGACCACATACAGAACCCGCACCTCCTGTCTTGTGCTTGGCTGCACAAACAGGACTGGAGGCTGAGGCAAGGAGCTTGGCTGTGGTGTCAGGCCCAGAGTCTAAGCCTCTTATGTCCACATCACGATTCTCTGCCCTATGTCCAGCTCCTTACCCTAGCATTTGGTCCATATAGCATCCAGTCACCTTTTCCACTCAGTAGAACTCTCCAGGGTCTGTGGGGTTTGTAGTCCAGTTCGTAGTGCACTTTGAAGTCTAGGTCCCACAAGGACTTATTATGCCTTCCTCTATCCTTCATAGAGCTGTGGGCTGCCCCCGCTGCCCCGGTTTCTGCCACACTGACTCTGACCTTGGTACCACTGTTGGTAGACCCAGTTGATAGACGACCCATAGGCAGCCACTCAGGTTTAACTCTTTCTCCAACACAG
Seq C2 exon
AGCCTTCTGGGAGGAGGTCAAAGGGCAAGAAGAATGATTCAAAAAGGAAAGGCCGAGAGGGTCCCAAGGGCAGCAGCCCTGAGAAGAAAGAGAAAGTGAAGGCTGGGCCCGAGTCTGTGCTGGGGCAGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020387:ENSMUST00000020655:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=NA C2=0.924
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types