GgaINT0017580 @ galGal4
Intron Retention
Gene
ENSGALG00000006424 | JADE2
Description
jade family PHD finger 2 [Source:HGNC Symbol;Acc:HGNC:22984]
Coordinates
chr13:15088038-15091827:-
Coord C1 exon
chr13:15091710-15091827
Coord A exon
chr13:15088176-15091709
Coord C2 exon
chr13:15088038-15088175
Length
3534 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
AGTTTTCCTTTTTCTCTAAAAAA
3' ss Score
-4.39
Exon sequences
Seq C1 exon
GTTAGAAATCTCTGTTACATGGTGACGAGACGGGAGAAAATGAAGCACACCATTTGTAAACTCCAGGAGCAGATCTTCCACCTGCAGATGATACTCATTGAGAAGGACCTTTACCCAG
Seq A exon
GTCAGTACCGCTTGCAGGAGCTGTTCGGTGCCCTCCTCTGAACCTCAGTCCCCCAACAGAGGAAGGCAGAGCCACCCCTGCCCTGCTGGGTGCTTCCACCACAGTTCTTACGTTGACTCATCGAACGTTTACAGCTTTGTTCTGAAGCGTGCAGTAATGCCTTATTGTGGGGGACCGAGTGTGACAGCAAGGACTGCTGGCACCGTCCCTCCTAATCCTCGCTCAGACGAATGCTGTTAGGTGCTGGTGCTAAAACAGAATCCCAGGGTTCACGCGAAGGTGCTGCTGCAGGAGCGCGTGGTATGGGGCTGCTCCTCAGCGCTGCCTGGCCTTGTGAAGCAGCTCTGGGGTCTGTTTGGTTCCCTCTGTCGTGCCAGAAGTTAAGCTGTGGATGGGATGGCTCTTACCTCCTTCAACGCTGTGGCCTGTAGTTCTTCCTGCTCCGTGTACTGGTTAGTGGGAATGACACATGTACTTCCTGCAAGGCCTCTGGCACCTCTTCGTTAAGGAACTGAAATAAAGTTGCTTTCCTTCTGTCTTTTTTTTTTTTCCCCTTTTAAGCAAGCACTGCCCAAACCCACAGCCCCGCATCCCTCCCCCTTTTTTCAGTGGCAGCACAGGACCAGGCTCTGTGGCTGCAGAACAGTTTTTCCAGAAGCAGCATCTGGAGCTTTGGCAAATGCATCCGACTCTTGTTGTGTTTGTGGCTTTGGAGTTGCATCTGAAGCCATCACATGTTTGGGGTTTCTTCAGGAACTGTCTGGGCTGAGCTTTCCTTTACAAAAGTTTCCTTTGACTGAAGTTTTGGAGGCCGAGACGTGTGCGTGTTGAGACGTGTGGGGTTTGGATCCTGTGCAGATCGCCCTGCGTGGCCGGAGCTGGGCAGCACAGGGCCCGGGGTGTGCAATGAGGACATGGGCTGGTGGCAGGGGCAGGTTGCTGCTCCTCTGGTTAGCAGGTTTCACTGAAAGGGCCGCTTCAGGAGCTCAGCCTGCTGTCACGTCGGCTGTTTGGGGAAGCTGGCTGAACCCAGTTCTTCAGCTGGGTCGTTTTCCAGGAAGGCTTTTGGCAGGGTGGGAACTCACCTCCCAGCACAGGACTGAACGGAGCTGGAGCACCAGAGCGCGTGCTGAGAGCTCCCGGTGGCATTGGATGTGCACGTGGGGGGAACTGGAGCATCTGTGAGTGTTTGGCCTGCCTGGAGGACTGTAGTTATGGGGCGATTTGTATGGCAGATGGGTATGCAGGCTTTGTGATTGCGTTCTGATGCAAGTGGTATTCTCATGTAGCCCCAAACACTTTGTATTTGTCCATGAGCTTTATGCTCTGAGCTGGCTGGGGCAAGCTGCTGTTCAGCTGCTGGGTGGCCTCCCTGGGCTCTTTCCATGGGTCAAAGAGCATTTCATTGTTTTATTTTCTGTTGACAGCACAGCTCCCCGCTGTGGGATAGCACATCCCACCCCTCGGGCCATCTGTCCTCCAACCCTACGTGCTGCTCCCATCCTCAGTGCCCACATCCCACCTCTGCCACCCGCATCCCACACGATGCTCTCAGCACCCACACGTTTTGCTGAGCTTCCTCACTTCCAGGTGACTTACAGCTAAAGGTCCTCAGCAGCTCACAGCACCAAACCTATGTGAACCATGCTGCTGTGTTCTGCATTGTTTGCAACCGAAAAGTGATTCGATGGCTGAGTGAGTGGCAGTCGATGGGAGGTGGTCGCTGTAGCAATGCCTCTGTGCTGCTCCTGACCAGATTGCTCTGCACACCTGCAGTTTCTCAGAGAAAGAAGAAAATCTGCATTGTTTTGCCTGGACAAAGCTGGTTTTTAACTGCTTTTCACTGGAGCTATAACCAAAGTCAGTTGGGGTTATCCCAGGGGTGGTTTTAGCTCAGGTTGGTTTTGGAATGACTCCCATACGAAGAGCCATTCTTGAGGGGTTTATTTTTCTCACTGATAAATGATGATTTCAGCAGGAGATCTTTAATAAAATCAGTGAGAACTGCCCGTGTAAGATGAGCCCATCTCTCTCTCCCTTATTTTTATTGCACGAAGCGGGAAGAAAACGCTGCCTGGCTTTGAAACATGGCTGCTATTTTGACAGGTCCATCTTCACAAAGTAACGTTCACGTTTCTCTTTAGATCCCTTGTGCTGTCCAAACAAAGTTATGTTTTTATTTTGCAAGCAAAATGAAAAATGTGTCTGTTTCTCCTGTTATTTGGCAGGAACGCAGCAAATACCCATTTGGCTTTTGCTTTTCTTTCTTGTGGTGAGCCCTGTGCTTGTGAGGGGTTCTGGCAGCCCTGGGACTGTAAATCCCCTGTGCATGCAGGTGCTGTGCGGATGCCCTCTGCTCACCCCATGCGTTTCCAGCCTAGCTGGAAGGAGAGGGGCTGTTCTTTGGGCTGCCCCCATCCGACACAGCAAATTGATGCACTTGCATCAGGAACAGCGTCCAGTTCTTAACATCATTGCTTTGGCAGCTGCATGGCTTGTGCAGGTCTGAGCTGTCGGCCAGGCTGGCAGCCTGCATGGCTCACCTCCATCAGCTGCCCAAACGCTGGTGTGAGAGCAGTGTCCTTCCCCCTTCAAAAATCAAAATGGATGTTTTAGCACGGACTTCTCTGGGCCTGAGAGAGTAACTGAAAACCTTTGGAGTATTGCGCTTGGCAATACAAGTTGTACTTTTGTAGGGTATGTATTTGTCCTGTTTACCCAAGAGGAATAAATCCAGTAGAAATTCGAAACCATTTAGGAAACATTGATTTTTAGCTGAATGGCTGCATAGCTTGCAGTTACATTCCTGGCTTTCCATAGGCGATGTTGCTCATCTTTCCTCCTCCGTTTAGCTGTGTTCAATACGCCGGTTTTATAGCTTTGTTTTTTTCCATCACTGCCTGGTATGAGAGTAAACAGTTACCACAGCTGAAAGGTAAAATCACACCAAGGTCTGCTGAAAAACACTGCTAGTGCCACATGCTTTGCAGCTCAGTGCCTCCTGCAGCTGCATCTGCAGCCAGCCTGGGGTGCGCACAGGCGGTTTGCATGGTGTGCCAGCAGGTTTGGAGGGTCCCTGCTCTCCTGGAGGGTTTCAGAACAGTTTGGGTGTGTTGCTGGTCTTCTGGAGGGTTTCTGTATGGAGTTTGGGGTTATTTCTCATCTCCTGGTGGGTTTTACAGCAGGGTTTGGGCTTGTTCCTGGCCTCTGTGAAGTTTCCAGAGCAGAGATTGGGGGTGTCCCCTCTGCTTCTCCCTGCAGCCCCAAAACCCCATTCCAGGAGGGTGCCTTGGCGGCTGCACAATCTCTAGTGAGTCTGTTGCCTTTGGTGGCACTGCTCCTGTGGCCATGCCAAGCTCACAGCCCAAACCTTTTTTATGTAGCCTATGGGATTCACGTTTCCTTAACCTATAGAGACGTGAGCCTACATTTGGCCAAGAAGTGGCACAGCCTTCGTCCCTGCAGGGTGTGCCCCGGGGAGCTGTGGCTCATCCTGGGGCCTGGTCTCACACACAGTTTTCCTTTTTCTCTAAA
Seq C2 exon
AAATGCCAGAACAAACTGGGAAGAAGACAAAGGGTAAGAAAAGTGATCCGAGAAGGAAAGGAAGAGATGGTAGAAAAAATAGCCCTGAGAAGAAAGAAAAAAGGAAATCAGTCAACGAAACTGTGTTGGGACAACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006424:ENSGALT00000010368:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.766
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]