BtaINT0078764 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021687 | JADE2
Description
jade family PHD finger 2 [Source:HGNC Symbol;Acc:HGNC:22984]
Coordinates
chr7:47693853-47696966:+
Coord C1 exon
chr7:47693853-47693970
Coord A exon
chr7:47693971-47696831
Coord C2 exon
chr7:47696832-47696966
Length
2861 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
3' ss Seq
TCCTCCTCTCTCTTTCCCTGATG
3' ss Score
3.67
Exon sequences
Seq C1 exon
GTTAGAAATCTGTGCTACATGGTGACAAGGCGCGAGAGAACGAAACATGCCATCTGCAAGCTCCAGGAGCAGATATTCCACCTGCAGATGAAACTTATCGAACAGGATCTGTGTCGAG
Seq A exon
GTAGGCGCTTCCCCTGCCTGCCGCTGGCCACCTCTCGTGAGCACACCCTTGAGGGGGCTGGGTTCCAGGGAGCTATGTGTCCTCAGAGCCTGATGGGGCATGTGTACGGGGTCAGGGGCCACTGACCCCACCCTTACCCTCTGCACCCAGTTAGTGGACCAAGGCAGGGGCCTCCCAGGGTCCTGGGTGTGTGTTGGCAGGCAAGGAGCAAAGATGTGATGTGGGCATCAGGCCTACCCTCAGGGAGCTTTCTGGTTCACGGGGCTCTCAGGCAGTGCGGGGCCCATTGTGGTCCAGGAGTGAGTTGCATGTAAACAGGTGCAACCAGAAGTCTCCGTGGCTCTGTTTTGGCTCCAGGGCAGGAAGGGACCAAGCTGGCAAGCTTCCCTGAACCCCTGTGTGCCTGTGTGTTGATTCTGAAGAAGGCAATTGCCCAGGGGTGGAGGAGGAACTATGTGTTCCTTCTCTCTGACCCCAGCTGACAGGATTGAGGCCCTGTGCCAATAGGTTTTTTTTCTTCTTTCTTAGGCTTTTACCATCACATGCATTTAACAGATCTGGAAATCAAAGGTTAAAGAAGCTCTGAGAGTGATCTGTCTTGTTAGTTGTGGATGTTGCCAGACAACAGGGTCCTTTGTGGAGTGTGAACATGTTCAGGAGGGCAGTGCTTAGTGCAGAAGATGGTGCTCTGATGTTGAATTCCATGCAGTAAAAACAGGTGGATGGAGAGATTGTTAAGCCAGAGGCTGCCACTGCAGGTAGAGCCTGTGGGTTGGGCTAGGCCTGGAGCAGAGAAAGGAGAGTGGCTGGGCCACCACCAGAGTCAACAACTGAGGACCTTCTACTGCCCCATCCCTGCCCCAGAAACCAGCATTGCCCGATACAGATGCTGCATCACGACCATTTAGAGGTCAGGGCTCATCGTGCACTCCCAGGACTAGGGCAGCTTAGATAGGAGGCCCCCAGACCTTCCCAGGCTCCCTCTTGTTTGTCATTTCCTTGATTGAGGGTAGACAGAATACTGGGCTCTGTGCTGGGCACAGGGGTACCCTGCCGTGGACTGAACGGACAGGCTTCCTTTCCTCACAGAGTTCACTATCTGGAGAGACAAAAGAAGGTGGTGTCTGGGGGGCTGCCAGGGGTGCCAGTGCAGGGACAGAGCTATCAGGGATGGCTTCCTGGTGGTGGTGACGCTGGAACATCTCAGGCTTCCTGGGGCTCACACGGGCCTTACATCCCACTGCAGGAAGGCAATGGAGAGTGGCGAGGCATGCAGTGCCCTTAGGCACAGGATTCCAGAAACATGGTCAGGAGCTCGGAGGGTCTGCATTCTCTCATTGAGTCTGGAGACATTTAGGCAATGGCACCCCACTCCAGTACTCTTTCCTGGAAAATCCCATGGACGGAGGAGCCTGGTAGGCTGCAGTCCATGGGGTCGCTAAGAGTCGGACTCGACTGAGCGACTTCACTTTTACTTTTCACTTTCATGCATTGGAGAAGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGACGGGGGAGCCTGGTGGGCTGCCATCTATGGGGTCACACAGAGTCCGACACAACTGAAGTGACTTAGCAGCAGCAGCAGCAGACCTGAGCAGCAGCAACAGGCCACCTTTTGGTCAGGGCAAGGAATTTGGAGAGAAGACTGGTTTGCCTCTGCCCGAAGCCGATGCCCTCAGTGTTTTGATGCTTCTTCCATAGGGTGGGACATGGGCTGCAAGTATATTGCTGAGGTCTGTCTGGCCAGGAGCCTAGAGAAGGCTTCCCAGTGGTGGTGATACTTAGGCTGTGAACAGAACCAGGGGAGGGACAAGGAAACCATATATTTGGGGACCTGGAGGTGAGCTTGTCTTGTTAGAGGAACTGGAAGGACCCTGGCATAGCTGCAGCCAGGGCAAGAAGAAAACGTCTGAAGTGACACTAAGGGCTTGGAGGGTCAGCTGTGTAAGGTCTGTGCCCTTGGGAGGAGCTCAGGCCACAACGAGTGTGGTGGGGGACTTGGAAGCCTCCCTCCAAGTATGTAGGTGCTGTCCCATGTGATAGGTGAGAAGACTGAGGCCTGGCCCGAGGTTACACCTAGAATGAACAGCAGAGCTGGGCAGAATCCTGGAGTTGGGCCCATGCTCCTCCACCTTCTCTTGAACGCTTACTCAGGAAGCCCTCCAGCCTCTGGCTGAGAAGCTAGGAGGAGACTCCTGGCAGCTCCCTACCACAGCATGTCCCTCCCCTGCTCTGTTTTGTTCTGTGACTCCGCAGACCTATGTGGTCCTGGACTAGAAGGGTGTGAGGGCCAGGTGTGTACCCCGAGTCTCCCATCAACTGTCTAACCTCCAGAGCAGACAGAGAGCAAGGCAGGGGGCTGACCCCTGTGTCAGGAGGGGAACCCAAGGCTGTTGACCCCTCAGTGACCTATCCACCTTCACCTCCATGGCCTAGCCCATGAGGCCCTGTCCTATCCACTCACCTCCAGCCAGCCTTCCTGCCCACTAGGACTGTGTCCTAGGATCTGTAGTCCGTAGAGGTCAAACTGCGGCGCAGGTCTATAGAGTGGTCTTCCCCCTCCTCGTGTCGCTGAGCCCCGCACTAAGCTCCTCAGGGACTCTTACCCCCTTTTCCCACATCAGCTATTCCCTGACTCGCTGGAGCCACAGTTATCCTAGGTCCCACGTGGGTGGGACCTACCCACCCTGCGGAGGTGCAGGGGAGGTGACCTAGAAGGCGAGACACCAAGTGATGGGGCTCTCCTGGGATTCCACACAGGGGTCTTGGTTCTGTCTGGCCTGCTTGGGGTAACCATCTCCCTCCTCCTCTCTCTTTCCCTG
Seq C2 exon
ATGCAGAGCGGTCTGGGAGGAAAACAAAGGGCAAGAAGAGCGACTCAAAAAGAAAAGGCCGCGAGGGCCCCAAGGGCAGCCCCGAGAAGAAAGAGAAAGTGAAGGCAGGGTCCGACTCAGTCCTGGGGCAGCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021687:ENSBTAT00000028903:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.804
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]