RnoALTD0015119-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000003841 | Kcnh1
Description
potassium voltage-gated channel subfamily H member 1 [Source:RGD Symbol;Acc:68398]
Coordinates
chr13:111009573-111068464:+
Coord C1 exon
chr13:111009573-111009965
Coord A exon
NA
Coord C2 exon
chr13:111068035-111068464
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTTAGT
5' ss Score
7.15
3' ss Seq
CCGTGTCCATTCTGTTCTAGGGC
3' ss Score
11.53
Exon sequences
Seq C1 exon
GTCCTGCAGCTGGGTTCAGACATCCTCCCCCAGTACAAGCAAGAGGCGCCAAAGACACCCCCTCACATCATCCTACACTACTGTGTCTTTAAGACCACATGGGATTGGATCATCTTGATCCTGACCTTCTACACAGCCATCCTGGTCCCTTACAACGTCTCCTTTAAAACCAGGCAGAATAACGTGGCCTGGCTGGTGGTGGACAGCATCGTGGATGTCATCTTTTTGGTGGACATTGTCTTGAATTTTCACACCACCTTTGTCGGGCCAGCGGGGGAAGTGATCTCTGACCCCAAACTTATCCGCATGAACTACCTGAAGACGTGGTTTGTGATCGACCTTCTCTCCTGTTTGCCATATGACGTCATCAACGCTTTTGAGAACGTGGATGAG
Seq A exon
NA
Seq C2 exon
GGCATCAGCAGCCTGTTCAGTTCTCTGAAAGTCGTGCGGCTGCTCCGTCTCGGACGAGTGGCCCGCAAGCTGGACCATTATATCGAGTACGGAGCGGCGGTACTGGTCCTGCTGGTGTGCGTGTTCGGGCTGGCTGCCCACTGGATGGCCTGCATCTGGTACAGCATTGGGGACTATGAGATCTTTGATGAAGACACCAAGACCATCCGTAACAACAGCTGGCTCTACCAACTGGCATTGGACATTGGCACTCCATACCAGTTTAATGGGTCTGGTTCGGGGAAGTGGGAAGGCGGGCCAAGCAAGAACTCCGTATACATTTCCTCGCTGTACTTCACCATGACAAGTCTCACCAGTGTGGGCTTTGGTAACATCGCCCCATCCACAGACATCGAGAAGATCTTCGCCGTAGCCATCATGATGATTGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003841-11-15,12-15-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PU(29.5=49.6)
A:
NA
C2:
PF0052026=Ion_trans=FE(65.0=100)
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCACACCACCTTTGTCGGG
R:
AACTGAACAGGCTGCTGATGC
Band lengths:
169-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]