RnoALTD0015931-1/4 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000023233 | LOC102546648
Description
uncharacterized LOC102546648 [Source:RGD Symbol;Acc:7541917]
Coordinates
chr1:99488667-99489250:+
Coord C1 exon
chr1:99488667-99488756
Coord A exon
NA
Coord C2 exon
chr1:99489149-99489250
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGATG
5' ss Score
4.44
3' ss Seq
AGATATTCTTCCAACTACAGGCT
3' ss Score
5.16
Exon sequences
Seq C1 exon
AGATTGGTGTCCTTTGAGGATGTGACTGTGGACTTTAGCCAGGAGGAGTGGCGGCGCCTGGACCCTGCCCAGAGACGCCTGTACCAGGAG
Seq A exon
NA
Seq C2 exon
GCTACCCTATTCCCAGCCCTGGGGCCATCTTCAGGATAAAGAAAAGAAAGAAGACACAGACAGGAGAGGCTAAGTTCCCACATCATCAGTGTTGGTGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023233-5-3,6-3,7-3,8-3-1/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.086
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTTGAGGATGTGACTGTGGA
R:
TATCCTGAAGATGGCCCCAGG
Band lengths:
118-147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]