RnoALTD0015931-4/4 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000023233 | LOC102546648
Description
uncharacterized LOC102546648 [Source:RGD Symbol;Acc:7541917]
Coordinates
chr1:99488667-99489250:+
Coord C1 exon
chr1:99488667-99488756
Coord A exon
chr1:99488757-99488793
Coord C2 exon
chr1:99489149-99489250
Length
37 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
3' ss Seq
AGATATTCTTCCAACTACAGGCT
3' ss Score
5.16
Exon sequences
Seq C1 exon
AGATTGGTGTCCTTTGAGGATGTGACTGTGGACTTTAGCCAGGAGGAGTGGCGGCGCCTGGACCCTGCCCAGAGACGCCTGTACCAGGAG
Seq A exon
GTGATGCTGGAGATCTACAGCCACCTCTTGTCAGTGG
Seq C2 exon
GCTACCCTATTCCCAGCCCTGGGGCCATCTTCAGGATAAAGAAAAGAAAGAAGACACAGACAGGAGAGGCTAAGTTCCCACATCATCAGTGTTGGTGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023233-5-3,6-3,7-3,8-3-4/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.086
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTTGAGGATGTGACTGTGGA
R:
TATCCTGAAGATGGCCCCAGG
Band lengths:
118-155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]