RnoALTD0016045-2/5 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000060019 | LOC103692984
Description
uncharacterized LOC103692984 [Source:RGD Symbol;Acc:9397727]
Coordinates
chr7:142868580-142870313:-
Coord C1 exon
chr7:142870213-142870313
Coord A exon
chr7:142870155-142870212
Coord C2 exon
chr7:142868580-142868718
Length
58 bp
Sequences
Splice sites
5' ss Seq
CGTGTGAGT
5' ss Score
7.42
3' ss Seq
ACCATTGCTATCCCTTCCAGAGG
3' ss Score
8.58
Exon sequences
Seq C1 exon
CGGAGAGCCACCCGAACTGGGGGTGTTGTGATGGCGGGGGCCACGGTCTTCCGAGACCGGAGTGGGCAGACTTGCGCCCTCTGAGGACAAGGCCGAACAAG
Seq A exon
GCGAGTGGCCCAGGGTTGGAGAGCCGAGGAATGTGGCAGTCATCCGGCGCGGCTACGT
Seq C2 exon
AGGAGGAAACTGAGACCCAGACAGAAAGCACCTTGCCAGGAAGGTCCTCGAACAGGAAGGACAAAGCTGACGTCCCAAACAAGGCACGTTCTGGAACTTCTGCCTAACTACTCTGTGATGCTGACTTCAATTCTTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060019-2-1,3-1,4-1,5-1,6-1-2/5
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAACTGGGGGTGTTGTGATG
R:
CTTCCTGGCAAGGTGCTTTCT
Band lengths:
132-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]