RnoINT0067288 @ rn6
Intron Retention
Gene
ENSRNOG00000007346 | Grasp
Description
general receptor for phosphoinositides 1 associated scaffold protein [Source:RGD Symbol;Acc:70554]
Coordinates
chr7:142869752-142872138:+
Coord C1 exon
chr7:142869752-142870087
Coord A exon
chr7:142870088-142872088
Coord C2 exon
chr7:142872089-142872138
Length
2001 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCGT
5' ss Score
9.49
3' ss Seq
CGGGCCATTTTCCCACCCAGGGC
3' ss Score
7.48
Exon sequences
Seq C1 exon
ACACGAGGCCCGCTGGGCTGGCGTCCCAAAGCCGTCGCCAACCCCATCTACCGGAGTGAGTGCGGCCTCCGAGGGGCGCCGGACGCCGGAGCCATGACCCTTCGCCGACTCAGGAAGCTGCAGCAGAAGGAGGAGGCGACGGCCGCGCCGGACCTCGCTGGCCGGGCTCCCGACTCCGAAGCCGCTCGCGCTGCGCCGACCCCCTCCGGCCCCCCGGCTGCCGCCGCTCCGCCAGGAGCCCCCGGGGACGAGCTGTACGCAGCATTGGAGGACTATCACCCTGCGGAGCTGTACCGCGCGCTCGCCGTGTCCGGGGGCACCCTGCCCCGCCGAAAG
Seq A exon
GTGCGTTACTTAACCTGCATCCCCAGACTCGGTACCCTGCCTTCTTCCTTCGGCAGGTCCAACTCACACGTAGCCGCGCCGGATGACTGCCACATTCCTCGGCTCTCCAACCCTGGGCCACTCGCCTTGTTCGGCCTTGTCCTCAGAGGGCGCAAGTCTGCCCACTCCGGTCTCGGAAGACCGTGGCCCCCGCCATCACAACACCCCCAGTTCGGGTGGCTCTCCGTCCCATTCCCCACGCGCGGATGCCCCATCTCCTCCCACTCTCTTGCCTTGACTCCGCCTCAGCACCCCCTTTCTCCAGCTTGCTCCATCTGGCTTTCTGCCGCCTCCTGCTCCGCCTGCGGGTGTCCAGAAGTCTAAAAACTCTCAGGACCCTGCCGCCCCAGCACCTTCTAGAGTTGGAGCAGGGCTAGAGAAGGAACCCCACCTCTTGCCTCGAACAAGTTGAGGGTCCTGGAGCCCTGGGCGGGAGAAACACCAATGACCCCTTAGAAGTAGTGCTGCGAATTCCCAAGAACGCCCCCTCCTCAGGGACACCGGCTTCCTGCGCTCAGGGACTCTCGCTTTGTCCCGCATCTTAGATGCGGGATGAGAAAGCACCGCTTTTCTAACTTCAGCCAGGACCGGACGCGGTGGGAGAGTCACAGGGCAGGAAGGATGCGGGCCGCACCCGCCCTCTGCCCTAAGTCTCCCTCTAAGTGAGGCTCTTCCTTTGGCTTGAGAGGACCTGAGTCCACCGACGCTGAGACCCAAGACCCAGATTAAGGAGAAGGGATGAGTATCCCTTCCCTACGCGGGCCCCCTCCTTCTCTCCTGGTCCCTGGCTCCCCCCTACATACAATGAACAGCTTGTTGAGAATTTGCATTTTATGAAAATCGGGTTGAAAAACAAAGGGGTCTCTCTGTACTGCCCAGTCCTTCCTTCTTGGCCTATTTGAGTAAGTTCCCACCCTGAGGCTAATCTTTGCTGGAGGAAGGTCACCTTCCCTTCCTTGCTTTGGGGTAGCTTATGGGGGTAGAGAGTGTTAACAAAAGCACAGACCGGGAAGGCCTCAGGCAGTTTGGCACTTGGGGAAAGGGTTGGTCCCGGATGAGACTTCCTCCTAGAACTAAAATCTTAGGAGGGACAGAGGTTGTTTTAGGTTATTGGTTTAAAAACAACAACAACACAACCACCAGTTTCTCAAGTATAGTGAGACAAGTTTGATTCTGACGTTCCAGGGGGGAAAAGGCAATATCAAGAGACTCAGGTTTGGGGGACATAACAGCCAGCTTCATCTGGAATATACTGCTCTACCTACCCCCAGGGAACCTGTTCTTAGGAGATTTGACACCTCTGCCACATCCAGGCTAGCACTGCCAGGCTCCTGACTCTCTGCACTCCCCAAAATACTGGGTTTGCCTGAACCCAGCATTTAATAAAAGGGACAGACCCAGATGGCGTGGGTCTGTGGAGTAAGATTCTTACTTCCTTCTTCAACCCAGGGAAGCTCCTGCCCCAGGTTTCGGGGCCTGCAAAGTCTGGACCCATTAGACATGATGCCAGTGGTGACATTACTCTAGAGTCACATTCTTCCCCAAGCTGGTTAGCAGAGGCTGAGTTTACAGGTCTGGAACCCAGGACAGATGTGACCCCGAGGTCCCAGGGACAGTGTGAACTCTGGGAGTGATGACAGCAGCTGCCTTTGGCAAATAGTTACATTAGCACCAAAGCAGAGGTATAGCTGGGAGGGAGAAGACAGGCAGCAGGAAGTGGGGTGCTGTGCTGGAGCTAGGCTCCTGTGAGTCCTCCCAGAGAGGGTTCCTCAGTGTCCTCCCAAGGGTAGCCCCTTCTCACCATTGCCCCAGGATAGCCCCTTCTCACCATTGCCCCAGGATAGCCCCTTCTCACCATTGCCCCAGGATAGCCCCTTCTCACCATTGCCCCAGGATAGCCCCTTCTCACCATTGCCCCAGGATAGCCCCTTCATCATCTTTTCGGGCCATTTTCCCACCCAG
Seq C2 exon
GGCTCAGGATTCCGTTGGAAGAATTTTACTCAGAGTCCTGAACAACAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007346:ENSRNOT00000009979:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.716 A=NA C2=0.706
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]