HsaINT0072110 @ hg19
Intron Retention
Gene
ENSG00000161835 | GRASP
Description
GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein [Source:HGNC Symbol;Acc:18707]
Coordinates
chr12:52400748-52403023:+
Coord C1 exon
chr12:52400748-52401049
Coord A exon
chr12:52401050-52402973
Coord C2 exon
chr12:52402974-52403023
Length
1924 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCGT
5' ss Score
9.49
3' ss Seq
CTGACCATCTTACTGCCCAGGGC
3' ss Score
7.09
Exon sequences
Seq C1 exon
CCAGCCCCGCCGAGGGGAGCCAGCGCCGTCTCTGAGGGGCGTCCGGCGCCGGAGCCATGACCCTCCGCCGACTCAGGAAGCTGCAGCAGAAGGAGGAGGCGGCGGCCACCCCGGACCCCGCCGCCCGGACTCCCGACTCGGAAGTCGCGCCCGCCGCTCCGGTCCCGACCCCGGGACCCCCTGCCGCAGCCGCCACCCCTGGGCCCCCAGCGGACGAGCTGTACGCGGCGCTGGAGGACTATCACCCTGCCGAGCTGTACCGCGCGCTCGCCGTGTCCGGGGGCACCCTGCCCCGCCGAAAG
Seq A exon
GTGCGTCCCCCGCCCGCCTTCAGGATCTGCTCAGCCCCTCTCCGACTCCCTACAGGGCCTGCTGACTCCGCAGTGCCCTCTCCTCGGCGTCCGCGGAGTCCCCCACCTTCTTCCCCGGCCCGCTGGGTGCCTCGACTCCCCGCGTTCCCCGCTGCTGCGAAGGCCGTGGCCCTCGCCTGCACACCGCGCCCAGGCTCGGTGGCTCTTAACTCCGCGCCCCATGCACGCCCCCTCTCTCCCTCCTTGACTCCTCCCAGCACCCCCCTTCTCCTACCCGCTCCATCTGGCTTTCTGCCCCCCATGCCCCGCCTCCCCGTGGCCAGGTGTCCTGGGTCCCCAGGAGCCCCTCGCCCGAGGGACAGAGACAGCCCCAGGCAAGTTGAAGGTCCGAGAGCCCCCGGTGGGAGAAGCGGGCCGGTGGCTGCGCCGCGTGCGTTCTCACTCTGAGGAAGTGCGTGGGGAGCCGCTGACTCCGGATAGCACACCCTTCCGAGGGGACTCCCCGATTCCTGGGCTGGGGGCCTGCCGCCTGGCCCCACGTCTGACGTACGGGGCGCGAGGGCCACTGCTCCCTGGACTTCTGTCGGAACCGGACGCAGTGGGAGGGGTCGCAGGGCGCCCGCGGGGCAGGAAGGATGCGGGCCGCGCCCACCTCTGAGTCCCCTCTGCCAGCCTCTTCCTCTGGCCCCAGGAGACCTGAGGCTCAGAACCTACACAACACCAGGTTAAGAAGAGGGGCCTGGTGGCCTTTCCTCACCCAGCCGCCCTCCTTCGCCCCGGCCCCCAGCTAGCCCCCACACAATGAACAGCTTGTTGAGAATTTGCATTTTATGAAAATCATGTTGAAAGACAAAGGGGTCTCTCTGTGCTGCCCAGTCCTTCCTCCCTGGCCGTTTGGGAACTGTCCCCACCCCTGAGGCCAATCTGGTTCTGAACCTTCTCTTCCTTGCCTTGGGCAGCTTTGGGGGAGGGTTAGCAAAGGCACAGAACAGAAAGGCCCTGGGCTGTGCAGGCTCCAAAGAAAAGGGCTGCTCTGGGACTGGACCTCCTCCCAGGACCAAAAAGTTAGGGAGGGTGAGAGACTACTTTAGTTTATCAAGGACCCTGAAGAGACAGGAACCTTCATCTCTCATCCTTCCTCCACACCCCCCACCACCACCCCTAAAGAACTCCCAGTCTCGGTCCTTTAGTGAGACTTGCTGACAAGTTTGACATCTAAGATGTTTTGTCCCAGAAAGCACAAAATATATGGCAATGGAGAGAGAGACCCAGGTATAGCTGGGCACAGCTGGTCACCTGCAGCTGGGATCCACAACTGGTCCTTGAAACGGCCTGTACCTTAGGAGACCTGGCACCTCTGACCCCACATTCTGGCTGGGATTGCCAGCCCTTCGGGACAGGGTCCCTGACCCCAGCCCTCCCAAGCCACTGTCTGTAGCTGAGAAATTAGATGGAGAGACCCAACTGGCAGAAGGTCCTCGGAGCACCTTGATAGGTGAGCCCAGGGGACACCTATCCTCTGAATCCCACTGGGGAAGAGCCCCTGCCTCAGCTTTGGGAGTCTGGATGGCCTGAGCCTCTACAGACATGGGCCCTAGGGGTGGAGACCATTTTAGAATAATGATCTCCCCACCTGCTGCCAGTGTGGAAACCAGCAAGGGCTTAGAGGTTCATGGATCTGGAACCCAGGAGGATGGTTGTGTCCCTGCAGTCCCAGGTATGAAGGTAAGGCCTGTAGAGAAAGTTGAGGAGTGGTGCCAGTAGTGGCACTTGGCAAATAGTTCCACCAGCACCAAAACAGGTGTGGATGTGGAGCTGGGAAGGGGCAGACAGGAAGTGGGTCGCTGTGTCCAGGGTAACCTCTCAGTGTCTGCTCAAGGACAGTCCCGCCTTACCTGCTCCTTCTGACCATCTTACTGCCCAG
Seq C2 exon
GGCTCAGGATTCCGCTGGAAGAATCTCAGCCAGAGTCCTGAACAGCAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000161835-GRASP:NM_181711:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.707 A=NA C2=0.824
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCTCTGAGGGGCGTCC
R:
CGCTGCTGTTCAGGACTCTG
Band lengths:
326-2250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)