MmuINT0073608 @ mm10
Intron Retention
Gene
ENSMUSG00000000531 | Grasp
Description
GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein [Source:MGI Symbol;Acc:MGI:1860303]
Coordinates
chr15:101224207-101226963:+
Coord C1 exon
chr15:101224207-101224544
Coord A exon
chr15:101224545-101226913
Coord C2 exon
chr15:101226914-101226963
Length
2369 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCGT
5' ss Score
9.49
3' ss Seq
CTGACTGTTTTACCACCCAGGGC
3' ss Score
7.8
Exon sequences
Seq C1 exon
CTACACGCGGCCCGCTGGGCTGGCGTCCCAAAGCCGTCCCTAACACCATCAAGCAGAGAGAGCGCGGCCTCTGAGGGGCGCCGGACGCCGGAGCCATGACCCTCCGCCGACTCAGGAAGCTGCAGCAGAAGGAGGAGGCGACTGCCGCGCCGGACCCCGCTGGCCGGGCTCCCGACTCCGAAGCCGCTCGCGCCGCCCCGCTACCCTCCGGCCCTCCGGCTGCCGCCGCTCCGCCCGGAGCCCCCGGGGAGGAGCTGTACGCAGCACTGGAGGACTATCACCCTGCCGAGCTGTACCGCGCGCTCGCCGTGTCCGGGGGTACCCTGCCTCGCCGAAAG
Seq A exon
GTGCGTTACTTAACCTGCATCCCCAGATTCGGTACCCTGCCTTCTTCCTTCCGCAGGATACACTCACCCGCAGCAGCGCCGATGACTGCCACATTCCCCGGCCCTGCGACCCTGGGCCACCCGCCTTGCTCCGCCCAGAAGGTGCAAACCTGCCCACTCGGGTCTCAGAAGGCTGTAGCCCCCGCCATCACAACGCCCCCAGTTCGGGTGGCTCTCCGCTCCATTCCCCACACGCGGATGCCCCATCTCCTCCCACTCTCTTGCCTTAACTCCGCCCCAGCACCCCCTTTCTACAGCTTGCTCCATCTGGCTTTCTGCCGCCTCCTGCTCCGCCTGCGGGTGTCCAGAAGTCTAAAAACTCTCAGGACCCTGCCGCCCAAGCACCTTCTCAAGTTGGAGCAGGGATAGAGAAGGAACCTCACCACTTGCCTCGAACAAGTTGAGGGTCCTGGAGCCCTGGGCGGGAGAGAGATTAATGGCCCCTTAGAAGTAGTGCTGCGAATTCCCAAAAACTCCCCCTCCGCAGGAACACTCGGCTTCTTGGGCTCAGGGCCTCGTGCTTTGTACCGCATCTTAGATGCGGGATGTGAAAGCGTAGCTCTTCTAACTTCAGCCAGGACCGGACGCTGTGGGAGAGTCACAGGGCAGGAAGGATGCGGGCCGCACCCGCCCTCTGCCCTAAGTCTCCCTCTAAGTGAAACTCTTCCTCTGGCCTGAGAGAACCTGAGTCTTCAGATGCTGAGAGCCAAGACCCAGGTTAAAGAGAAAGAATGGGTAGCCCTTCCCTATGCGGCCCCCTCCTTCTCTCATGGTCCCTGGCTCCCCCTACACACAATGAACAGCTTGTTGAGAACTTGCATTTTATGAAAATCGGGTTGAAAAACAAAGGGGTCTCTCTGTACTGACCGGTCCTTCCTTCTTGGCCTATTTGGATACTGTCCCCACCCAGAGGTTAGTCTGCTTCTGGAGGAAGAGGGTCCCCTTCTCTTCCTTGCTTTAGGGTAGCTTATGGGGGTAGAGAGTGTTAACAAAAGCACAGACCAGGAAGGCCTCAGGCAGTTTGGCACTTGGGGAAAGGGTTGGTCCCAGATGAGACTTCCTCCAAGAACTAAAATCTTAGGAGGGACAGAGGTTGTTTTTAGGTTATCTGGGGTCCGGAAGAGTTCAGGACATTCTAAAAAAAAAAACAAAAAAAGCTCCCAGTTTTTCAAGCATAGTGAGACAAGTTTGATTCTGAGATTTACTTGTTTTTATTTATTCAATAATTATTTTGTTCTAGAAAAAAATTCATGGCAATATCAAGAGACTCAGGTTTGGAGGGCATACAGCCAGCTTCATCTGGAATCTACTGTCCCACCTACCCCCAAGCAACCTGTTCTTAGGAGATTTGGCACCTCTGTCACATTCAGGCTGTCATTGCCAGGCCCCTGGCTCTCTGCTCTCCTGAATACTGGGTCTGCTTGAACCATTAAATGGACAGACTCAGCTGGTGGGAATCTGTAGAGTAAGAACCCTAAGTCTATGGCTTCCTTCTTCAACTCGGGGAAGCTCCTGCCTCAGCTTTTGGGGCCCGGAAGGTCTGGACCCATCAGACATGATGCCAGTGGTGAGATTATTCTAGAGTCACAGGCTTCTCCAAGCTGGTTAGCAGAGGTGGAGTTTACTGATCTAGAACCCAGAATAGATGTGACCCTGAGGTCCCAGGGACCGTGTGAACTCTGGGAGTGATAACAGCAGCTACATTTGGCAAATAGTTAAATTAGCGCCAAAGCAGAGGTGTAGCTAGGAAGGAAAAGACAGGCAGCAGGAAGTGGGGTGCTGTGTCAGAGTTGGGCTCAGGTGAGAGTCCTTCCAGAAAGGGTTCCTCAGCATCTGCCCCAGGATAGCTCCTTGTCAGCATCTGCCCCAGGATAGCCCCTTGTCGGCATCTGCCCCAGGATAGCCCCTTGTCGGCATCTGCCCCAGGATAGCCCCTTGTCGGCATCTGCCCCAGGATAGCCCCTTGTTGGCATCTGCCCCAGGATAGCCCCTTCTCGGCATCTGCCCCAGGATAGCCCCTTGTCGGCATCTGCCCCAGGATAGCCCCTTGTCGGCATCTGCCCCAGGATAGCCCCTTGTCGGCATCTGCCCCAGGATAGCCCCTTGTCGGCATCTGCCCCAGGATAGCCCCTTGTCGGCATCTGCCCCAGGATAGCCCCTTGTCGGCATCTGCCCCAGGATAGCCCCTTCTCAGCATCTGCCCCAGGATAGCCCCTTCTCAGCATCTGCCCCAGGATAGCTCCTTGTCAGCATCTGCCCCAAGATAGCACCTTCTCAGCATCTGCCCCAGGATAGCCTTTTCATTGTCTTCTGACTGTTTTACCACCCAG
Seq C2 exon
GGCTCAGGATTCCGTTGGAAGAATTTCACTCAGAGTCCTGAACAGCAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000531:ENSMUST00000000543:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.741 A=NA C2=0.824
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types