MmuALTD1038908-2/5 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000097915 | A330009N23Rik
Description
RIKEN cDNA A330009N23 gene [Source:MGI Symbol;Acc:MGI:2443491]
Coordinates
chr15:101223481-101225074:-
Coord C1 exon
chr15:101224974-101225074
Coord A exon
chr15:101224967-101224973
Coord C2 exon
chr15:101223481-101223633
Length
7 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGG
5' ss Score
6.13
3' ss Seq
AAGCAGCCTTCCTTTCCCAGGGC
3' ss Score
6.17
Exon sequences
Seq C1 exon
GTTCCTGCGGAGGGGGAGTTTTTGGGAATTCGCAGCACTACTTCTAAGGGGCCATTAATCTCTCTCCCGCCCAGGGCTCCAGGACCCTCAACTTGTTCGAG
Seq A exon
GCAAGTG
Seq C2 exon
GGCTAGGAGAAAGGGAAGCTGTGGAAACCTGCAAGCAGGTTTAAATCCGAGCCCTACTGGGGCCACCCCAAGGCTTGAAATCACCTCTCCACTCTGGATGCTGGAGTTAAGGCTCTCGTTCCTCACCTGGGGTTTGGAATATGCCCAGAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000097915-0-0,1-0,2-0,3-0,4-0-2/5
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGACCCTCAACTTGTTCG
R:
GGTGATTTCAAGCCTTGGGGT
Band lengths:
108-115
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types