MmuALTD1038908-4/5 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000097915 | A330009N23Rik
Description
RIKEN cDNA A330009N23 gene [Source:MGI Symbol;Acc:MGI:2443491]
Coordinates
chr15:101223481-101225074:-
Coord C1 exon
chr15:101224974-101225074
Coord A exon
chr15:101224612-101224973
Coord C2 exon
chr15:101223481-101223633
Length
362 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
3' ss Seq
AAGCAGCCTTCCTTTCCCAGGGC
3' ss Score
6.17
Exon sequences
Seq C1 exon
GTTCCTGCGGAGGGGGAGTTTTTGGGAATTCGCAGCACTACTTCTAAGGGGCCATTAATCTCTCTCCCGCCCAGGGCTCCAGGACCCTCAACTTGTTCGAG
Seq A exon
GCAAGTGGTGAGGTTCCTTCTCTATCCCTGCTCCAACTTGAGAAGGTGCTTGGGCGGCAGGGTCCTGAGAGTTTTTAGACTTCTGGACACCCGCAGGCGGAGCAGGAGGCGGCAGAAAGCCAGATGGAGCAAGCTGTAGAAAGGGGGTGCTGGGGCGGAGTTAAGGCAAGAGAGTGGGAGGAGATGGGGCATCCGCGTGTGGGGAATGGAGCGGAGAGCCACCCGAACTGGGGGCGTTGTGATGGCGGGGGCTACAGCCTTCTGAGACCCGAGTGGGCAGGTTTGCACCTTCTGGGCGGAGCAAGGCGGGTGGCCCAGGGTCGCAGGGCCGGGGAATGTGGCAGTCATCGGCGCTGCTGCGG
Seq C2 exon
GGCTAGGAGAAAGGGAAGCTGTGGAAACCTGCAAGCAGGTTTAAATCCGAGCCCTACTGGGGCCACCCCAAGGCTTGAAATCACCTCTCCACTCTGGATGCTGGAGTTAAGGCTCTCGTTCCTCACCTGGGGTTTGGAATATGCCCAGAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000097915-0-0,1-0,2-0,3-0,4-0-4/5
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCTGCGGAGGGGGAG
R:
CTACTCTGGGCATATTCCAAACCC
Band lengths:
254-616
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types