BtaINT0068787 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021658 | GRASP
Description
GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein [Source:HGNC Symbol;Acc:HGNC:18707]
Coordinates
chr5:28025361-28027764:-
Coord C1 exon
chr5:28027442-28027764
Coord A exon
chr5:28025411-28027441
Coord C2 exon
chr5:28025361-28025410
Length
2031 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCGT
5' ss Score
9.49
3' ss Seq
TGACTCTCCTTCCCACCCAGGGC
3' ss Score
9.3
Exon sequences
Seq C1 exon
GGCTGGCATCCTAGAGCCACCGCCAGCCCCGCCGCGCGGAGAAAGCGCCACCAGAGAGGGGCGCCGGAGCCATGACCCTTCGCCGACTCAGGAAGCTGCAGCAGAAAGAGGAGGCGGCGGCCGCCCCAGACCCCTCCGCTCGGGCTCCTGACTCGGAAGCCGCTCCCGCCGCTCCGACCCCGACCCCGGCCTCGGGCCCCCCTGCTGCAGCCGCCGGCCCTGGGACCCCCGGGGACGAGCTGTACGCAGCGCTGGAGGACTACCACCCCGCCGAGCTGTATCGCGCGCTCGCGGTGTCCGGGGGCACCCTGCCCCGCCGAAAG
Seq A exon
GTGCGTACCTCCCCAACTCCCGCGGACCCCCTCGGCCCCCGGTCCCCATGGACGCCTGAGGATCCCCACCCACACCATACTCCTGGGGTCCCCGAGTCCCCCAGTTCCTCCCCCGGCCTCTGATCCCCACGGACACCTTCAGATCCTGCTGGGTCCCCTCGACCCCTCTGCTCAGAAGGCGCAAACTCCCCCATCCCCGGCTCCACGCCGCTCGCGAGCTGGGCGGCTCTCCACTCCCCACGCGCCGCTGCCCCGTCTCGCTGCTCTCCTTCCTGCTGCTTCCTCAAGTTGCCTTCCCCTCGCCCCAACCGGCCATCGCCACCCCGCCCCAGCCCCGCCTCCCCGCGTCCAGGAGTATTGAGGTCCCCAGGATCCCCCCGCCCCGGCTTCTCCCGTGGGAGCAAGAGGCCTCGAGCTGGGGTCCGGCCGCTAGTCGATTCAAGTTGAGAGTCGGCGGGCCCGGGGTGGGACTCTCGCCAAGGAAGTGCCTGCGGGGCCGCCGACTCCGAAAGCTCACCCTTCCGAGGGGGCGCCGGAATTCCTGGGCTCGGCCGCCTCACCCTGCGTCTGAGGTGCGGGGCGCGAGGCCACGGCTCCCTGGACGTCAGCGGCGACCGGACGCGGTGGGAGGGTTCGCAGGGCGCCCGCTGGGCAGGAAGGATGCGGGCCGCGCCCGCCCTCGAAGTCTCCCCCTCCGCCGGGCTTTTCCTCTGGCCCGACGGGGACCCGAGCGCTCAGAAAGGAAACTCAAGACCCAGGTTAAGGAGAGGGGACTGGTGGCCTTTCCCAGCTCAGCCCCCCCTCCTCTTCCTCTGGCCCCTGGCTCCCCCCCCAACACAATGAACAGCTTGTTGAGAATTTGCATTTTATGAAAATCGGGTGGAAAGACAAAGGGGTCTCTCTATGCTGCCCAGTCCTTCCTCCCTGGCCCGTTTGGGAACTGTCCCCACCCTTGAGGCCCGTCTGTAAGGTTCTAGAGAAGGAGGGCTTCCTTCTCTTCCTGGCCTCGGGGTAGCCTGGGGGGAGAGTTAACTAGCGCACTGACCAGGAAGCTCCTGGATTGTTTGGGGCTCGCGGGGCAAGGGCTGATCTGGAACCGAGCTTCTTCCAAGCATCAGTCATTTAGGGAGGGAAAGACACTGCTTTAGTTTCTCAAGGACCCAAAAGAGGTAGGGAGTCCCTCAGCTCTGTCGTCCCTCCTACCAAAAAGCAAATGAAACCAACCAAACAACAATAACAAAACCTTCCCATCTCTCTCCTTGAGTGTAGTGAGACTTAACAAGTCTGAGATCAAAGTTTTTGTTTTGTCCCAGAAAGCAACAACATGTATCACAATGCTGAGGGACCCAGGTGGAGCTGGGCACAGCTGGCCACCTGCAGCTGGACTCCATAGTTTGAGGGAGGGGGCTTGGCCCCTCTATCCCCTGCCTTACCATGCTTAAGCTGAGATTCCAGCCCTCTAGACCAGGGCCCCTGACCCCAGCTCCTGCAAGCCACTCTCTGTGACTGAGAAATTAGAAGAGATCTGACTGGCCTTGGTGGCTCTGAAATGTCTTGATAGGCAAGCCCAGGGGCCCCTGCCCTTCTCTGAATAATATCTAGGAAGAGCCCCTGCTTCACCTTTTGGGGTCTAGGGTGCCGAGCCCCTGCAGACATGCACCCTGGGGGCAGAGGCTATTCTACCTAGAGTCATGAAAACCCCCACCCCTTCCAGACTAGGAACCAGGACAGGACTTAGAGGTTCATGCATCTGGAGCCCAGGAGATTGTTGTGTTCCCGAGGTCCCAGTTGTGGGGATAAAGCTTAGGGAGAAAGCTGTGGAGTGATATTGATGGTGGCACTCTAGGGTTAGTTACTCCAGCATCAGAAGAGCAGGTGTGGAGCTGGAACAGGACAGATAGGCAACAGGAAGTGAGATGCTGGGTCTAGGACTTGAGCCCAGGCGAGGAACCCCACAAAGGAGGGCTCTCAGCATCTGCTCCAGGACACCTCCCTCTCACCTGCTTCTTCCTGACTCTCCTTCCCACCCAG
Seq C2 exon
GGCTCAGGATTCCGCTGGAAGAACCTCAGCCAGAGTCCTGAACAGCAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021658:ENSBTAT00000028862:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=NA C2=0.824
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]