RnoALTD0016256-3/4 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000042847 | LOC687707
Description
hypothetical protein LOC687707 [Source:RGD Symbol;Acc:1597577]
Coordinates
chr10:57240494-57240947:+
Coord C1 exon
chr10:57240494-57240557
Coord A exon
chr10:57240558-57240636
Coord C2 exon
chr10:57240830-57240947
Length
79 bp
Sequences
Splice sites
5' ss Seq
CCGGTACCT
5' ss Score
5.7
3' ss Seq
CTATACTGTCCTCTCAACAGAGA
3' ss Score
8.85
Exon sequences
Seq C1 exon
GAGGTGCAGCGACTGGAGAGAGGCAACGGCTGCCCAGACCCAGCCCTGGACACTGGGGATCCTG
Seq A exon
GTAGGGCGCTGGCCCGTGTAGCCCTGGCAGCAGGGCAGGGGATTCGGCAAGCTGGAGCAGCAGCTGGCGCAAGTGCCCG
Seq C2 exon
AGATACTCGGGAAACCTCAAGGTGTCGTCCAGCAACAGTGAGGAGAATGGGGGGACAGATAATCCATCACTGTCCCAGGCCCACCCTGTGTCCAAATAAAAGTCCAGAACGGGATGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042847-5-7,6-7,7-7,8-7-3/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.161 A=NA C2=0.938
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCGACTGGAGAGAGGCAA
R:
ATCATCCCGTTCTGGACTTTT
Band lengths:
176-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]