RnoINT0083488 @ rn6
Intron Retention
Gene
ENSRNOG00000042847 | LOC687707
Description
hypothetical protein LOC687707 [Source:RGD Symbol;Acc:1597577]
Coordinates
chr10:57240470-57240947:+
Coord C1 exon
chr10:57240470-57240748
Coord A exon
chr10:57240749-57240829
Coord C2 exon
chr10:57240830-57240947
Length
81 bp
Sequences
Splice sites
5' ss Seq
CCGGTGCGT
5' ss Score
9.74
3' ss Seq
CTATACTGTCCTCTCAACAGAGA
3' ss Score
8.85
Exon sequences
Seq C1 exon
ATCTCAGCCCTGTGGCTACAGCAGGAGGTGCAGCGACTGGAGAGAGGCAACGGCTGCCCAGACCCAGCCCTGGACACTGGGGATCCTGGTAGGGCGCTGGCCCGTGTAGCCCTGGCAGCAGGGCAGGGGATTCGGCAAGCTGGAGCAGCAGCTGGCGCAAGTGCCCGGTACCTGATCCAGGGGGCGTGGTTGTACCTGTGTGGACGTGGTTTGCACGGGTCTACCTCATCCCTGCAACAAACCCTTCGCCAACTGGGCCTTGGGGTCCCTGGGGATCCG
Seq A exon
GTGCGTTTGGGATAAAGGGTATGATGAGGGTCAGAGGAGGTATGATTAAGGAGATACTGAGCTATACTGTCCTCTCAACAG
Seq C2 exon
AGATACTCGGGAAACCTCAAGGTGTCGTCCAGCAACAGTGAGGAGAATGGGGGGACAGATAATCCATCACTGTCCCAGGCCCACCCTGTGTCCAAATAAAAGTCCAGAACGGGATGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042847:ENSRNOT00000067919:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.161 A=NA C2=0.938
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTGCACGGGTCTACCTCAT
R:
TTATTTGGACACAGGGTGGGC
Band lengths:
170-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]