RnoALTD0017335-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000016584 | Mamdc4
Description
MAM domain containing 4 [Source:RGD Symbol;Acc:708583]
Coordinates
chr3:2787617-2787974:-
Coord C1 exon
chr3:2787869-2787974
Coord A exon
chr3:2787840-2787868
Coord C2 exon
chr3:2787617-2787744
Length
29 bp
Sequences
Splice sites
5' ss Seq
TCTGTGAGT
5' ss Score
7
3' ss Seq
TGCCTGCTCCCTGCTCTCAGACA
3' ss Score
9.52
Exon sequences
Seq C1 exon
GCCACTTCGCTTTCTTTGAAACCAGCGTGCTAGGTCCTGGGGGCCAGGCAGCCTGGCTGCGCAGTGAGCCACTGCCAGCAACTGCAGTCTCCTGCCTCCACTTCTG
Seq A exon
GTACTACATGGGCTTTCCTGCGCATTTCT
Seq C2 exon
ACAAGGGTGAGTTGAGAGTGCTCCTGAGCAGTACCCAAGGACAGCTAGCTGTGTGGCACCGGGGTGGGCACTTGCGGGACCAGTGGCTACAAGTCCAGATTGAAGTGTCCAGCTCTGAGGAGTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016584-25-26,26-26-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062918=MAM=FE(27.1=100)
A:
NA
C2:
PF0062918=MAM=FE(25.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCTCCTGCCTCCACTTCTG
R:
TCTGGACTTGTAGCCACTGGT
Band lengths:
120-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]