GgaALTD1013726-2/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000008995 | MAMDC4
Description
MAM domain containing 4 [Source:HGNC Symbol;Acc:HGNC:24083]
Coordinates
chr17:556096-556587:-
Coord C1 exon
chr17:556482-556587
Coord A exon
chr17:556453-556481
Coord C2 exon
chr17:556096-556223
Length
29 bp
Sequences
Splice sites
5' ss Seq
TCAGTGAGA
5' ss Score
2.69
3' ss Seq
GCTGTCCCCCTGTGCTGCAGCGG
3' ss Score
7.18
Exon sequences
Seq C1 exon
GTCACTATGTGCACTTCGACACCCGCGTGCTGGGCGCGGGGGGCACCGCTGCCCGGCTGGAGAGCCAACACCTCCCCGCCACCACTGCCGGCTGCCTGCGCTTCTG
Seq A exon
GTACCACATGGACATCCCGGAGCACCTCA
Seq C2 exon
CGGGCGGGGAGCTGCAGGTGAAGCTGCAGAGCGCGGCAGGGCAGCACACGGCGTGGAGCGTGGCAGGGCAGCGGAGCCAAGGCTGGCAAAGCAGCACAGTGCCTTTGGAGAGTCCCAGTGAGTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008995-36-44,37-44-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=NA C2=0.116
Domain overlap (PFAM):
C1:
PF0062918=MAM=FE(27.1=100)
A:
NA
C2:
PF0062918=MAM=FE(25.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATGTGCACTTCGACACCCG
R:
CAGCTTCACCTGCAGCTCC
Band lengths:
128-157
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]