RnoALTD0017616-3/4 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000006241 | March7
Description
membrane associated ring-CH-type finger 7 [Source:RGD Symbol;Acc:1308993]
Coordinates
chr3:46286781-46305052:+
Coord C1 exon
chr3:46286781-46286881
Coord A exon
chr3:46286882-46287188
Coord C2 exon
chr3:46304888-46305052
Length
307 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
3' ss Seq
AACAAATTTGCATTTTGCAGGAA
3' ss Score
7.43
Exon sequences
Seq C1 exon
TCTCTGCTCGTAGCCCGAGGACCGAGCCCAGCGAGGAAGGGGGCGGCGGTGTGGCTGCGGCGAGCGCGACACTCCCTGCGGAGTGCCAAGTGGGAAGGAGG
Seq A exon
GTAAAGAGCGGCGGCGGCGGCGGCAACGGCGGTGGTGGGGGAGGGGAGCACTGGAGTGCGGGCCTCTCCCCTCCCCCACCCCGGGACCCCGGGGGCTGGGAGGGCGGATGGTGCGTGCCCCTCGGGGACCCGCGACCGCCTGGGACGACGGGCGGCGGTAGTGTGGGGTCGGTCCACCCGGGATTTCGGTTTCCCAGCCCCTCGGAGTCGGTGAAGGTAGGCCTCTCCGTGGCCCCGCACCGTGAGTGGCGTGACACTGGCATGGAGGCAAAATAGGATGGCTCTTCTAATTCAGACCCGGGCGAGA
Seq C2 exon
GAAACCTTAAGAATGGAGTCTAAACCTTCCAGGATTCCAAGAAGAATTTCTGTTCAACCCTCTGGCTCTTTAAGTGCTAGGATGGTATCTGGAAACCGAGGAACCAGTTTAAATGATTCCTATCATTCTAGAGACTCTTCCTTTAGACTGGATTCTGAATATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006241-1-3,2-3,3-3,4-3-3/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTGCTCGTAGCCCGA
R:
TGATATTCAGAATCCAGTCTAAAGGA
Band lengths:
265-572
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]