RnoALTD0019228-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000015035 | Myo7b
Description
myosin VIIb [Source:RGD Symbol;Acc:1561153]
Coordinates
chr18:24804001-24814320:-
Coord C1 exon
chr18:24814280-24814320
Coord A exon
chr18:24814203-24814279
Coord C2 exon
chr18:24804001-24804114
Length
77 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAAT
5' ss Score
3.77
3' ss Seq
GTCTCTTCCCTGCTTTCTAGGGT
3' ss Score
10.86
Exon sequences
Seq C1 exon
GCTGAAGGAGCTGCTGACCTGGGATGTCCGTGTTCCGGCTG
Seq A exon
GTAAGAACAGTGCTTACTGTGGACGTTTCCTAAGGCTGTGGCCTTAGGAAAGAAGAGAGCCAAAGAGATCCCAGAAG
Seq C2 exon
GGTGACCATGTGTGGCTGGACCCTCCCTCCAGCAACAAGACTGGTGTGGCCATTGGAGGCATTGTCAAAGAAACAAAACTGGGGAAGACCTTGATTGAGGATGACGAGGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015035-1-1,2-1-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAAGGAGCTGCTGACCTG
R:
TGCCCTCGTCATCCTCAATCA
Band lengths:
152-229
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]