RnoEX0057476 @ rn6
Exon Skipping
Gene
ENSRNOG00000015035 | Myo7b
Description
myosin VIIb [Source:RGD Symbol;Acc:1561153]
Coordinates
chr18:24804001-24823837:-
Coord C1 exon
chr18:24823752-24823837
Coord A exon
chr18:24814280-24814320
Coord C2 exon
chr18:24804001-24804114
Length
41 bp
Sequences
Splice sites
3' ss Seq
CTCTGCTTTTTTCCCTACAGGCT
3' ss Score
12.38
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GGAGCTCTGAACCTGTCTCCCTACTTGGATCTTTCAGGGTGCCCTGGGTGGAGTCAATAGGGTCGCTATACTCTGATCCTGATAAG
Seq A exon
GCTGAAGGAGCTGCTGACCTGGGATGTCCGTGTTCCGGCTG
Seq C2 exon
GGTGACCATGTGTGGCTGGACCCTCCCTCCAGCAACAAGACTGGTGTGGCCATTGGAGGCATTGTCAAAGAAACAAAACTGGGGAAGACCTTGATTGAGGATGACGAGGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015035-'0-1,'0-0,1-1
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTCTGAACCTGTCTCCCT
R:
CACACCAGTCTTGTTGCTGGA
Band lengths:
133-174
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]