MmuEX6000720 @ mm10
Exon Skipping
Gene
ENSMUSG00000024388 | Myo7b
Description
myosin VIIB [Source:MGI Symbol;Acc:MGI:107709]
Coordinates
chr18:32015432-32036961:-
Coord C1 exon
chr18:32036873-32036961
Coord A exon
chr18:32021535-32021575
Coord C2 exon
chr18:32015432-32015545
Length
41 bp
Sequences
Splice sites
3' ss Seq
TTTTGCTTTTCCTCCTACAGGCT
3' ss Score
12.13
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
TGCCAGGAGTTTTGAAACTCTCCCTACCTGGATCTTTCAGGGTGCCCAGGGTGTAGTCAAAAGGGCTGCTCTACTCTGATCTTGACAAG
Seq A exon
GCTGAAGGAACTGCTGACCTGGGATGTCCGTGTTCCGGCTG
Seq C2 exon
GGTGACCATGTGTGGCTGGACCCTCCCTCCAGCAGCAAGACTGGTGTGGCCATTGGGGGCATTGTCAAAGAAACAAAACTGGGAAAGACCTTGATTGAGGATGACGAGGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024388-'0-4,'0-2,3-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGCTGCTCTACTCTGATCT
R:
TGCCCTCGTCATCCTCAATCA
Band lengths:
140-181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types