HsaEX6015462 @ hg19
Exon Skipping
Gene
ENSG00000169994 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:7607]
Coordinates
chr2:128293378-128321841:+
Coord C1 exon
chr2:128293378-128293407
Coord A exon
chr2:128317275-128317315
Coord C2 exon
chr2:128321728-128321841
Length
41 bp
Sequences
Splice sites
3' ss Seq
TGCTTTCTCTCTCCATACAGGCT
3' ss Score
11.33
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GGGAGTCAGCCAGACCCCCATCCTGACAAG
Seq A exon
GCTTGTGGAACTGCTGACTCAGGATGTCGGGGTTCAGGCTG
Seq C2 exon
GGTGACCACGTGTGGCTGGAGCCTCCCTCCACCCACAAGACCGGCGTGGCCATCGGGGGCATCATCAAAGAGGCAAAGCCAGGCAAAGTCTTGGTTGAAGATGACGAGGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169994-'0-2,'0-1,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGACCCCCATCCTGACAAG
R:
GCCCTCGTCATCTTCAACCAA
Band lengths:
132-173
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)