RnoALTD0020561-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000008810 | Nsmf
Description
NMDA receptor synaptonuclear signaling and neuronal migration factor [Source:RGD Symbol;Acc:619819]
Coordinates
chr3:2267381-2268040:+
Coord C1 exon
chr3:2267381-2267470
Coord A exon
NA
Coord C2 exon
chr3:2267916-2268040
Length
0 bp
Sequences
Splice sites
5' ss Seq
ACAGTAGGT
5' ss Score
5.67
3' ss Seq
GTGACCCCTCCTGCCTCCAGGCA
3' ss Score
9.53
Exon sequences
Seq C1 exon
CGTTCGCTGAGCGGCGCGAACGGAGCTTCAGCCGGTCCTGGAGCGACCCCACCCCTATGAAAGCCGACACCTCCCACGACTCCCGAGACA
Seq A exon
NA
Seq C2 exon
GCAGTGACCTACAGAGCTCACACTGCACCCTGGATGAGGCTTGTGAGGACCTGGACTGGGACACAGAGAAAGGCCTGGAGGCCACGGCCTGCGACACTGAGGGCTTCTTGCCACCCAAGGTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008810-14-16,15-16-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.839 A=NA C2=0.100
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGAAAGCCGACACCTCCCA
R:
TTCTCTGTGTCCCAGTCCAGG
Band lengths:
105-117
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]