RnoALTD0020995-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000005021 | Orc4
Description
origin recognition complex, subunit 4 [Source:RGD Symbol;Acc:735212]
Coordinates
chr3:33065366-33076507:-
Coord C1 exon
chr3:33076407-33076507
Coord A exon
chr3:33076321-33076406
Coord C2 exon
chr3:33065366-33065432
Length
86 bp
Sequences
Splice sites
5' ss Seq
CAGGCGAGT
5' ss Score
2.92
3' ss Seq
CCTATTTTCATTTTTTTTAGATT
3' ss Score
9.94
Exon sequences
Seq C1 exon
CGGCTGCTCCCGGTGTAGGGAGATGTCTCCAGCCACGGCCACAGCAGCCAGCAGCAGCAGCAGCAACAGCAGCAGTAGCGCAGCAGCAGCAGCAGCCAAAG
Seq A exon
GTCTGGTTTGCTAAGCAGGCTTTTGGTCCTCTTTCTCTCCTTCTCTCACGGCCAGAGAAGGAGGGTGGAGGGGGCTCTGGAAGCAG
Seq C2 exon
ATTTGAGTTAGTCAAGATGAGCAATCGTAAAAGCAAGAATAACATACATGCAGAGTGTCTTTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005021-0-5,1-5-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.235
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGCTCCCGGTGTAGG
R:
CTGGGAAAGACACTCTGCATGT
Band lengths:
167-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]