RnoEX0062395 @ rn6
Exon Skipping
Gene
ENSRNOG00000005021 | Orc4
Description
origin recognition complex, subunit 4 [Source:RGD Symbol;Acc:735212]
Coordinates
chr3:33065366-33075685:-
Coord C1 exon
chr3:33075584-33075685
Coord A exon
chr3:33068554-33068624
Coord C2 exon
chr3:33065366-33065432
Length
71 bp
Sequences
Splice sites
3' ss Seq
TTGATTATGGTTTTTTATAGTTG
3' ss Score
6.19
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
CTTGGCTGCCGCAGGTGAAACAGAGCTGGGAAGGCGGTGAACAATCCTGGGTCCTTACAGTCGGCGGAGGCTGCCCGATTTAGGCAGGCTTTATTGAGAGAG
Seq A exon
TTGTTGTCTCCATCTGATTCAGAGAGAAATTTTGTGGGGCACTGGATTATGACACCAGACAGAAGATCTGG
Seq C2 exon
ATTTGAGTTAGTCAAGATGAGCAATCGTAAAAGCAAGAATAACATACATGCAGAGTGTCTTTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005021_MULTIEX2-2/4=C1-4
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.235
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGTGAAACAGAGCTGGG
R:
CTGGGAAAGACACTCTGCATGT
Band lengths:
159-230
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]