RnoALTD0021407-2/5 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000015294 | Paxx
Description
PAXX, non-homologous end joining factor [Source:RGD Symbol;Acc:1306215]
Coordinates
chr3:2679958-2680180:-
Coord C1 exon
chr3:2680168-2680180
Coord A exon
chr3:2680164-2680167
Coord C2 exon
chr3:2679958-2680007
Length
4 bp
Sequences
Splice sites
5' ss Seq
TGCGTAACT
5' ss Score
1.81
3' ss Seq
CAATTACGTGTTTCCAACAGAAA
3' ss Score
7.5
Exon sequences
Seq C1 exon
CCTGGCGACGCTC
Seq A exon
GTGC
Seq C2 exon
AAAGCCCGATTTGGCCTAAGTGGGACTGAGGATATCCATTCCCGGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015294-1-3,2-3,3-3,4-3,5-3-2/5
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF153841=DUF4610=FE(10.2=100)
A:
NA
C2:
PF153841=DUF4610=FE(8.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]