HsaALTD1026553-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000148362 | C9orf142
Description
chromosome 9 open reading frame 142 [Source:HGNC Symbol;Acc:HGNC:27849]
Coordinates
chr9:136992640-136992974:+
Coord C1 exon
chr9:136992640-136992700
Coord A exon
chr9:136992701-136992704
Coord C2 exon
chr9:136992925-136992974
Length
4 bp
Sequences
Splice sites
5' ss Seq
TGGGTAACT
5' ss Score
4.34
3' ss Seq
CAAGCCCCTGTGCTCTCTAGAAA
3' ss Score
5.42
Exon sequences
Seq C1 exon
CGTGACCGACGCCGCGGAGCTTTGGAGCACCTGCTTCACGCCGGACAGCCTGGCGGCCCTC
Seq A exon
GTGG
Seq C2 exon
AAAGCCCGTTTTGGCCTGAGTGCGGCTGAGGACATCACCCCCCGGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148362-1-2,2-2-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF153841=DUF4610=FE(10.1=100)
A:
NA
C2:
PF153841=DUF4610=FE(8.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains