HsaALTD1026553-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000148362 | C9orf142
Description
chromosome 9 open reading frame 142 [Source:HGNC Symbol;Acc:HGNC:27849]
Coordinates
chr9:136992640-136992974:+
Coord C1 exon
chr9:136992640-136992700
Coord A exon
NA
Coord C2 exon
chr9:136992925-136992974
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTCGTGGGT
5' ss Score
1.88
3' ss Seq
CAAGCCCCTGTGCTCTCTAGAAA
3' ss Score
5.42
Exon sequences
Seq C1 exon
CGTGACCGACGCCGCGGAGCTTTGGAGCACCTGCTTCACGCCGGACAGCCTGGCGGCCCTC
Seq A exon
NA
Seq C2 exon
AAAGCCCGTTTTGGCCTGAGTGCGGCTGAGGACATCACCCCCCGGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148362-1-2,2-2-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF153841=DUF4610=FE(10.1=100)
A:
NA
C2:
PF153841=DUF4610=FE(8.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains