RnoALTD0021407-1/5 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000015294 | Paxx
Description
PAXX, non-homologous end joining factor [Source:RGD Symbol;Acc:1306215]
Coordinates
chr3:2679958-2680180:-
Coord C1 exon
chr3:2680168-2680180
Coord A exon
NA
Coord C2 exon
chr3:2679958-2680007
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTCGTGCGT
5' ss Score
5.63
3' ss Seq
CAATTACGTGTTTCCAACAGAAA
3' ss Score
7.5
Exon sequences
Seq C1 exon
CCTGGCGACGCTC
Seq A exon
NA
Seq C2 exon
AAAGCCCGATTTGGCCTAAGTGGGACTGAGGATATCCATTCCCGGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015294-1-3,2-3,3-3,4-3,5-3-1/5
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF153841=DUF4610=FE(10.2=100)
A:
NA
C2:
PF153841=DUF4610=FE(8.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]